Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma06g00062 ATGCCTGCCCTGGCTTGTTGCGTGGATGCTGCAGCACCTCCCGGCTATGCATTTGCCGGTGACATCTCTTTTCCGGCGCCGGTCGCCCTTACTGGCGTACCTCCGGCCACGACAGACGACAGCAACAACAACCGTTGGTCGCCGTCCCTCTCCGCTGCGCTCTACAACGTCGACGGCTGGGGCGGCCCCTACTTTGCCGTCAACACCGCCGGGAACATCTCCGTGCGCCCACACGGTTCCGACACGCTGTCGCACCAGGAGATCGATTTGCTGAAGATTGTGAAGAAGGCCTCCGATCCCAAATCTCTTGGGGGTCTCAGCCTCCAGCTTCCTCTCATTGCCCGCTTCCCTGACGTTCTGAAGAACCGGTTGGAGTCCCTCCAGTCGGCGTTCGATTATGCAATCCAATCTGGAGGGTACGAGTCTCATTACCAAGGAGTTTACCCCGTGAAATGCAACCAGGACCGGTTCGTGGTGGAGGATATCGTGAAATTCGGTTCACCCTTCCGGTTCGGTCTGGAGGCCGGGTCTAAGCCGGAACTCCTTCTGGCCATGAGCTGTCTTTGCAAAGGCAACCCCGACGCGCTTTTGATTTGCAACGGCTTCAAGGACGCGGAGTACATTTCTCTTGCCCTGGTTGCCAACAAACTTGCCCTCAACACCGTGATTGTTGTGGAGCAGGAGGAGGAGGTTGATTTGATCGTTGAATTGAGCAAGAAGCTCTGTATTAAGCCCGTGATTGGGCTTCGTGCGAAGCTTCGGACCAAGCATTCCGGCCATTTCGGTGGGACTTCAGGAGAGAAGGGGAAGTTTGGGCTGACCACCGCTCAGATTCTTAGGGTTGTGAAGAACCTGGACCTCGCGGGCATGCTGGATTGCCTGCAACTGCTGCATTTTCATATTGGTTCTCAGATTCCCTCAACAGCGTTGCTTGCTGATGGTGTGGGAGAGGCTGCGCAGATCTACTGCGAGTTGGTTCGGCTCGGGGCGAACATGCGAGTCATCGATATTGGAGGTGGACTGGGCATAGATTACGACGGTTCCAAATCGTGTGACTCTGATATTTCCGTTGAGTACAGTCTCGAGGATTATGCAGTCGCGGTTGTTCACGCGGTTCAGTGTGTGTGCGACCGAAGGTCCGTGAAACACCCAGTTATCTGCAGCGAGAGTGGGAGAGCCATCGTGTCTCATCATTCGGTCTTGATTTTCGAGGCGGTTGGCACCAGCAGCACCACCGGGGGAGGAGCTTCCCCTGCATTGTCCGCTCAATATCTGGCGGAGGAGCTGTCGGAGGATTACCGCAATCTGTCGGAGCTGGCTTTTAGAGGGGAATATGAAACGTGTCTGGTGTACACGGAGGAGATGAAGGAGCGATGCGTGGAACAGTTCAAGCAGGGGACGGTGTGTATGGAACAGCTGGCAGCGGTGGAAGGATTGTGCGAGTTGGCGAGGAAGGCGGTTGGGGCGGGGGAATCGGTTCGGAGATATCACGTGAACCTGTCTGTTTTCACGTCCGTTCCAGACGCGTGGGGAATTGAACAGGTGTTTCCCATTATCCCAATTCACCGTTTGGACGAAAAGCCTTCGGTGAGGGGTATTCTCTCGGACTTGACTTGTGACAGCGACGGGAAGATTGACAAGTTCATCAACGGAGAGTCCAGCCTGCCGCTTCATGAGATGGAAGGAGGAAGAACTTACTATCTGGGAATGTTTTTGGGTGGGGCTTACGAGGAGGCGCTCGGTGGAGTCCACAACTTGTTCGGCGGCCCCAGCGTGGTCAGGGTGTCGCAGAGCGATGGCCCTCACAGCTTTGCGGTCACGCGTGCCGTGCCGGGGCCATCCTGTGGAGATGTTCTTCGAGTGATGCAGCACCAGCCCGAGCTCATGTTCGAGACACTCAAGCACCGCGCGCAGGAGTATGTCAGCCACGACAACGCAGCAGCGCTTCTGGCTGCTGGCCTTGCTCGCACCTTTGACAGAATGCCTTATCTGCTGTCTCTGTCTTCCTTTGTGGCTGACGATGTTGCCGCTGCTGTTCCTGCTGCTCAAGATCTGGGGGAGCAGTGTTCTAGGGTATTGTTTTGTGGCTTGAGTTTGAATTGGCTTCATCGTGTGTGCTGA 2121 0.5596 MPALACCVDAAAPPGYAFAGDISFPAPVALTGVPPATTDDSNNNRWSPSLSAALYNVDGWGGPYFAVNTAGNISVRPHGSDTLSHQEIDLLKIVKKASDPKSLGGLSLQLPLIARFPDVLKNRLESLQSAFDYAIQSGGYESHYQGVYPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNPDALLICNGFKDAEYISLALVANKLALNTVIVVEQEEEVDLIVELSKKLCIKPVIGLRAKLRTKHSGHFGGTSGEKGKFGLTTAQILRVVKNLDLAGMLDCLQLLHFHIGSQIPSTALLADGVGEAAQIYCELVRLGANMRVIDIGGGLGIDYDGSKSCDSDISVEYSLEDYAVAVVHAVQCVCDRRSVKHPVICSESGRAIVSHHSVLIFEAVGTSSTTGGGASPALSAQYLAEELSEDYRNLSELAFRGEYETCLVYTEEMKERCVEQFKQGTVCMEQLAAVEGLCELARKAVGAGESVRRYHVNLSVFTSVPDAWGIEQVFPIIPIHRLDEKPSVRGILSDLTCDSDGKIDKFINGESSLPLHEMEGGRTYYLGMFLGGAYEEALGGVHNLFGGPSVVRVSQSDGPHSFAVTRAVPGPSCGDVLRVMQHQPELMFETLKHRAQEYVSHDNAAALLAAGLARTFDRMPYLLSLSSFVADDVAAAVPAAQDLGEQCSRVLFCGLSLNWLHRVC 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma06g00062 706 TIGRFAM speA: arginine decarboxylase 46 664 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 148 166 IPR022653 -
Gma06g00062 706 Gene3D - 414 492 - -
Gma06g00062 706 PRINTS Arginine decarboxylase signature 198 213 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PRINTS Arginine decarboxylase signature 224 245 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PRINTS Arginine decarboxylase signature 376 393 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PRINTS Arginine decarboxylase signature 248 270 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PRINTS Arginine decarboxylase signature 574 595 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PRINTS Arginine decarboxylase signature 140 154 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PRINTS Arginine decarboxylase signature 116 131 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PRINTS Arginine decarboxylase signature 499 520 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PRINTS Arginine decarboxylase signature 524 549 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PIRSF ARGDC 34 666 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 148 166 IPR000183 GO:0003824
Gma06g00062 706 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 291 304 IPR000183 GO:0003824
Gma06g00062 706 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 386 405 IPR000183 GO:0003824
Gma06g00062 706 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 574 587 IPR000183 GO:0003824
Gma06g00062 706 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 172 184 IPR000183 GO:0003824
Gma06g00062 706 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 143 396 IPR022644 GO:0003824
Gma06g00062 706 Gene3D Alanine racemase 117 398 IPR029066 -
Gma06g00062 706 PANTHER ARGININE DECARBOXYLASE 1 673 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 PANTHER ARGININE DECARBOXYLASE 1 673 - -
Gma06g00062 706 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 55 597 IPR009006 GO:0003824
Gma06g00062 706 SUPERFAMILY PLP-binding barrel 116 398 IPR029066 -
Gma06g00062 706 CDD PLPDE_III_ADC 108 595 IPR002985 GO:0006527|GO:0008295|GO:0008792
Gma06g00062 706 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 329 342 IPR022657 -
Gma06g00062 706 SUPERFAMILY Alanine racemase C-terminal domain-like 490 598 IPR009006 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma06g00062 Gma-Chr6 595993 598869 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma06g00062 K01583 - gmx:548071 1335.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma06g00062 06 595993 598869 Gma06g00062 06 595993 598869 ECH
Gma04g00069 04 613706 615883 Gma06g00062 06 595993 598869 GST