Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02130 ATGGCATCGTCTTCGCTCACTTCAGTTCCTCTCTCATCTTCTTCACTCAACATTCCACATTCTTCCTCCAAAGCTTCCGCTAGCTTTGTATCTTCTCCAATTGGCGCATTCTCTCGCACCCCCAAAACCCTGTTTGCCGAATCAAGGTTCCACTTTCACCCGAAGAGAAACGATTATGGGTTTTCCATCAGAGCCCAGACCCTAGACTTCTCGGATTCATTCTTCGAAGGGGGTTTCGGCTCTGAAGACGACCCTTCTTCTCCCGGCGGACCCGGCTTCACGGCCGTGGAGGAAAAGGAGGAACCCCAATGCCCACCGGGTCTCAGACAGTACGAGACTATGATGGTTTTGAGGCCCGACATGTCCGAGGATGAACGACTTGCACTCACCCAGAAGTACGAGGAGGTGCTTGTTGCTGGAGGTGGCATGTATGTGGAGGTTTTTAACAGAGGAGTTATTCCACTAGCATATAGCATCAAGAAAAAAAACAAAGCAGGGGAAACCAACACTTATTTGGATGGCATCTACCTCCTGTTCACCTACTTCACCAAGCCTGAATCAATAACCCCTCTTGAGGAGACAATGCTAACGGATGATAATGTTATCCGATCAATGAGTTCCAAAATTAGGAAGAGGAAATATTAG 645 0.4822 MASSSLTSVPLSSSSLNIPHSSSKASASFVSSPIGAFSRTPKTLFAESRFHFHPKRNDYGFSIRAQTLDFSDSFFEGGFGSEDDPSSPGGPGFTAVEEKEEPQCPPGLRQYETMMVLRPDMSEDERLALTQKYEEVLVAGGGMYVEVFNRGVIPLAYSIKKKNKAGETNTYLDGIYLLFTYFTKPESITPLEETMLTDDNVIRSMSSKIRKRKY 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02130 214 Hamap 30S ribosomal protein S6 [rpsF]. 108 211 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma05g02130 214 CDD bS6_chloro_cyano 108 209 - -
Gma05g02130 214 Pfam Ribosomal protein S6 110 206 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma05g02130 214 SUPERFAMILY Ribosomal protein S6 108 212 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma05g02130 214 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 15 214 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Gma05g02130 214 Gene3D - 107 214 IPR014717 -
Gma05g02130 214 PANTHER 30S RIBOSOMAL PROTEIN S6 ALPHA, CHLOROPLASTIC 15 214 - -
Gma05g02130 214 MobiDBLite consensus disorder prediction 1 29 - -
Gma05g02130 214 MobiDBLite consensus disorder prediction 79 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02130 Gma-Chr5 42482581 42484426 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02130 K02990 - gmx:100500072 393.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02130 05 42482581 42484426 Gma05g02130 05 42482581 42484426 ECH
Gma05g02130 05 42482581 42484426 Gma08g00237 08 2007048 2008762 GST