Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02120 ATGGGGTGTTGTTGCACCAAACAGCGAGTCGATCATAAAGATCCAGCAGTTCTTGCTTCCCAAACCTATTTTAATATTTCTGAAATTGAAGCACTGTATGATCTGTTCAAGAAATTAAGCAGCTCCATCATCCACGACGGGGTTATCAGCAAAGAAGAGTTTCAGCTTGGCTTATTTGGAAGCAGCGAGAAACGGAGCCTCTTTGCCGACAGGGTCTTCCAATTATTTGACTCAAAAAATGATGGGGTGATAGAATTTGGAGAGTTCGTTAAAGCTCTCAGCGTCTTCCACCCAGCAGCGCCACAAGCACAAAAAGCAGATTTTGCATTTCGACTCTATGATATAAGTCAAAGAGGCTTTATTGAACGTGGCGAGGTAAGAGAGATGATCCTGGCACTACTGAATGAGTCAGATTTGGTTCTGTGTCATGACATTATTGAGGTCATAATTGACAAGACCTTTGAAGAAGCAGACTCAAAAGGAGATGGAAGGATTGATCCAGAGGAGTGGCAAGAATTTGTAGCTCGAAATCCATCCTTATTGTTGAGGAACATGACAATTCCCTATTTGAAGTAA 576 0.4201 MGCCCTKQRVDHKDPAVLASQTYFNISEIEALYDLFKKLSSSIIHDGVISKEEFQLGLFGSSEKRSLFADRVFQLFDSKNDGVIEFGEFVKALSVFHPAAPQAQKADFAFRLYDISQRGFIERGEVREMILALLNESDLVLCHDIIEVIIDKTFEEADSKGDGRIDPEEWQEFVARNPSLLLRNMTIPYLK 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02120 191 CDD EFh 105 175 IPR002048 GO:0005509
Gma05g02120 191 PRINTS Recoverin family signature 119 137 - -
Gma05g02120 191 PRINTS Recoverin family signature 165 185 - -
Gma05g02120 191 PRINTS Recoverin family signature 72 93 - -
Gma05g02120 191 SUPERFAMILY EF-hand 16 181 IPR011992 -
Gma05g02120 191 ProSiteProfiles EF-hand calcium-binding domain profile. 101 136 IPR002048 GO:0005509
Gma05g02120 191 PANTHER CALCINEURIN B-LIKE PROTEIN 5 1 191 - -
Gma05g02120 191 ProSiteProfiles EF-hand calcium-binding domain profile. 145 180 IPR002048 GO:0005509
Gma05g02120 191 SMART efh_1 149 177 IPR002048 GO:0005509
Gma05g02120 191 SMART efh_1 68 96 IPR002048 GO:0005509
Gma05g02120 191 SMART efh_1 105 133 IPR002048 GO:0005509
Gma05g02120 191 Gene3D - 14 191 - -
Gma05g02120 191 ProSiteProfiles EF-hand calcium-binding domain profile. 64 99 IPR002048 GO:0005509
Gma05g02120 191 PANTHER CALCINEURIN B 1 191 IPR045198 GO:0005509|GO:0019722|GO:0019900
Gma05g02120 191 Pfam EF hand 150 174 IPR002048 GO:0005509
Gma05g02120 191 Pfam EF hand 45 55 IPR002048 GO:0005509
Gma05g02120 191 Pfam EF hand 70 90 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02120 Gma-Chr5 42408726 42411585 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02120 22 191 EF-hand Containing Proteins AT5G24270 62.353 3.09e-76 225
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02120 K06268 - gmx:100808628 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02120 05 42408726 42411585 Gma05g02120 05 42408726 42411585 ECH