Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g02042 ATGTGGTTTCTTGGTTGGAAAGGGGCATCAGGGTTCTCAGCCTCTTCCACAGCCGAACAAGTCACTCAAGGGATTGATGGAACCGCCCTCACCGCCATCGTCACAGGAGCAACAAGTGGCCTTGGTCTGGAGACCACCCGGGTTCTTGCATTGCGCGGTGTCCATGTTGTTATGGCAGTAAGGAGTCTGGACAGTGGTAAGAATGTCAAAGAAACAATACTTAAGGAAATCCCCTCGGCTAAAATTGATGTCATGGAGTTAGATCTAAGCTCTATGGCATCGGTAAGGAAATTTGCAGCAGATTTTAATTCTTCTGGTCTTCCACTCAATATCCTAATTAACAATGCAGGGGTGATGGCGACTCCATTCACACTTTCCCAAGACAATATTGAATTGCAGTTCGCAACCAATCATTTAGGCCATTTTCTCTTGACAAACCTTTTATTAGAAACTATGAAAAAAACAGTAGGGGTATGCAACCAGGAAGGAAGAATAGTTATTCTATCATCAGAGGCACACAGATTTGCTTATCGTGAAGGGATTCAATTTGATAAGATCAATGATGAATCAGGGTATAGCAGTTATTTTGCTTATGGACAATCAAAGCTTGCTAATATCTTACATGCAAATGAGCTTGCAAGGCGCTTGAAGGAAGAAGGAGTGGAAATCACTGTCAACTCCCTTCATCCTGGATCAATTATTACAAATATTCTGCGATACCATGATTATATTAATGCCCTTGCTAACATGGTGGGCAAGTACTTCCTTAAAAATGTGCAACAGGGAGCTGCAACTCAATGTTATGTGGCATTGCATCCACAAGTCAAGGGAATATCTGGTGAATACTTTATGGATAGCAATAAGGGAAACCCGGCCTCTCTGGCTAAAGATTCAGAGCTGGCAAAAAAACTATGGGAATTCAGCTTAAGCCTGACTAATCCAAAGTAG 948 0.423 MWFLGWKGASGFSASSTAEQVTQGIDGTALTAIVTGATSGLGLETTRVLALRGVHVVMAVRSLDSGKNVKETILKEIPSAKIDVMELDLSSMASVRKFAADFNSSGLPLNILINNAGVMATPFTLSQDNIELQFATNHLGHFLLTNLLLETMKKTVGVCNQEGRIVILSSEAHRFAYREGIQFDKINDESGYSSYFAYGQSKLANILHANELARRLKEEGVEITVNSLHPGSIITNILRYHDYINALANMVGKYFLKNVQQGAATQCYVALHPQVKGISGEYFMDSNKGNPASLAKDSELAKKLWEFSLSLTNPK 315
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g02042 315 CDD retinol-DH_like_SDR_c_like 31 305 - -
Gma05g02042 315 PANTHER RETINOL DEHYDROGENASE 2 312 - -
Gma05g02042 315 Pfam short chain dehydrogenase 31 177 IPR002347 -
Gma05g02042 315 Gene3D - 25 315 - -
Gma05g02042 315 PANTHER NAD(P)-BINDING ROSSMANN-FOLD PROTEIN 2 312 - -
Gma05g02042 315 PRINTS Glucose/ribitol dehydrogenase family signature 31 48 IPR002347 -
Gma05g02042 315 PRINTS Glucose/ribitol dehydrogenase family signature 107 118 IPR002347 -
Gma05g02042 315 PRINTS Glucose/ribitol dehydrogenase family signature 157 173 IPR002347 -
Gma05g02042 315 PRINTS Glucose/ribitol dehydrogenase family signature 198 217 IPR002347 -
Gma05g02042 315 PRINTS Glucose/ribitol dehydrogenase family signature 221 238 IPR002347 -
Gma05g02042 315 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 31 286 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g02042 Gma-Chr5 41691035 41694009 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g02042 33 292 Acyl Lipid Metabolism Gene Families AT1G63380 25.362 3.70e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g02042 - K19329 gmx:100793781 600.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g02042 05 41691035 41694009 Gma05g02042 05 41691035 41694009 ECH
Gma05g02042 05 41691035 41694009 Gma08g00147 08 1240287 1242901 GST