Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g01888 ATGGATTCGAGTTCGGGGCATCAAGAATTCGATTATTTGTTTAAGTTGTTGATGATTGGAGACTCTGGGGTTGGCAAGAGTAGTCTTCTTCTCAGTTTCACCTCCGATGCTTTTGAAGATCTCTCCCCCACTATTGGTGTTGATTTTAAGGTCAAATATGTGACGATGGGGGGTAAAAAGCTGAAGCTTGCAATTTGGGATACTGCTGGCCAGGAGAGGTTCAGAACACTGACGAATTCTTATTACCGAGGGGCACAAGGAATCATCATGGTTTATGATGTAACCCGGCGAGATACATTTACAAATCTTTCTGAAATATGGGCAAAGGAAATAGACCTTTATTCAACTAATCAAGATTGCATCAAGATGCTTGTTGGAAACAAAGTAGACAAGGAGGGTGATAGAGTTGTGACAAAGAAAGAGGGAATAGACTTTGCCAGGGAATATGGTTGCCTATTTATTGAATGCAGTGCTAAAACTCGAGTTAACGTTCAGCAATGCTTCGAAGAGCTTGTTTTGAAGATTTTGGATACACCTAGCCTCATAGCCGAGGGCTCAAAGGGTGTTAAAAAGAACATTTTTAAGGAGAGGCCACCCCAGTCTGATGCATCCACAAGTAGTTGTTGCTGA 630 0.419 MDSSSGHQEFDYLFKLLMIGDSGVGKSSLLLSFTSDAFEDLSPTIGVDFKVKYVTMGGKKLKLAIWDTAGQERFRTLTNSYYRGAQGIIMVYDVTRRDTFTNLSEIWAKEIDLYSTNQDCIKMLVGNKVDKEGDRVVTKKEGIDFAREYGCLFIECSAKTRVNVQQCFEELVLKILDTPSLIAEGSKGVKKNIFKERPPQSDASTSSCC 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g01888 209 PRINTS Transforming protein P21 ras signature 14 35 - -
Gma05g01888 209 PRINTS Transforming protein P21 ras signature 36 52 - -
Gma05g01888 209 PRINTS Transforming protein P21 ras signature 54 76 - -
Gma05g01888 209 PRINTS Transforming protein P21 ras signature 118 131 - -
Gma05g01888 209 PRINTS Transforming protein P21 ras signature 153 175 - -
Gma05g01888 209 SMART ras_sub_4 11 178 - -
Gma05g01888 209 PANTHER SMALL MONOMERIC GTPASE-RELATED 1 209 - -
Gma05g01888 209 SMART rho_sub_3 16 178 IPR001806 GO:0003924|GO:0005525
Gma05g01888 209 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 9 185 IPR027417 -
Gma05g01888 209 ProSiteProfiles small GTPase Ras family profile. 9 209 IPR001806 GO:0003924|GO:0005525
Gma05g01888 209 ProSiteProfiles small GTPase Rho family profile. 7 176 - -
Gma05g01888 209 ProSiteProfiles small GTPase Rab1 family profile. 9 209 - -
Gma05g01888 209 PANTHER DRAB5-RELATED 1 209 - -
Gma05g01888 209 SMART rab_sub_5 14 178 - -
Gma05g01888 209 Gene3D - 7 209 IPR027417 -
Gma05g01888 209 TIGRFAM small_GTP: small GTP-binding protein domain 12 170 IPR005225 GO:0005525
Gma05g01888 209 SMART ran_sub_2 19 204 - -
Gma05g01888 209 CDD Rab18 14 175 - -
Gma05g01888 209 SMART arf_sub_2 1 179 - -
Gma05g01888 209 Pfam Ras family 15 176 IPR001806 GO:0003924|GO:0005525
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g01888 Gma-Chr5 40348665 40352510 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g01888 15 168 EF-hand Containing Proteins AT5G27540 25.625 7.29e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g01888 K07910 - gmx:100787603 415.616
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g01888 05 40348665 40352510 Gma04g02049 04 50936395 50945741 PCT
Gma05g01888 05 40348665 40352510 Gma06g01371 06 12880679 12884099 PCT
Gma04g02049 04 50936395 50945741 Gma05g01888 05 40348665 40352510 PCT
Gma06g01371 06 12880679 12884099 Gma05g01888 05 40348665 40352510 PCT