Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00649 ATGGCAGTTAGGGGGAAACACGAAGTGCTGTTTGCGGCACTTGAGTCATGGAAGAACCTCCACGAATTGAACCAGGTTCTGTCCCAACTCATCGTTTCTGGCCTCTCCCAGCACCCTCTCTTCGCCACCTCAGCCATCAAAAAACTCTGCTCCCATTCCGTCACTTTCCCACGCGCCACTTTCCTTTTCGATCATCTCCACCACCCCGACGCTTTTCACTGCAACACCATCATCCGCGCCTACGCTCGCAAACCCGACTTCCCCGCTGCTCTCCGCTTCTACTACTGCAAAATGCTCGCCCGTTCCGTCCCCCCAAACCACTACACGTTCCCCCTATTGATCAAAGTATGTACCGACATTGGGTCTTTCCGAGAAGGGCTAAAGGGTCATGCCCGGATTGTCAAATTCGGGTTCGGGTCAGATTTGTTTGCCCGGAACTCGCTGATTAGAATGTACTCTGTTTTCGGCAGAATTGGAAATGCCCGGATGGTGTTTGATGAAAGTTGTTGGTTGGATTTGGTTAGTTATAACTCCATGATTGATGGGTATGTCAAGAATGGGGAAATTGGTGCTGCCCGCAAAGTGTTCAATGAAATGCCTGATAGGGATGTTTTAAGTTGGAACTGCTTGATTGCGGGGTATGTTGGGGTTGGGGATTTGGATGCTGCGAATGAGTTGTTTGAGACAATACCTGAGCGGGATGCTGTGTCTTGGAATTGCATGATTGATGGGTGTGCGAGGGTTGGGAATGTTTCTCTGGCTGTTAAGTTTTTTGATCGGATGCCCGCGGCTGTGAGGAATGTGGTTTCATGGAATTCTGTGTTGGCGCTGCATGCGCGGGTGAAGAATTATGGTGAGTGTTTGATGCTGTTTGGTAAAATGGTGGAAGGAAGAGAGGCAGTGCCGAATGAGGCTACCTTAGTGAGTGTGCTCACCGCGTGTGCAAATTTAGGGAAGCTCAGTATGGGCATGTGGGTTCATTCTTTTATCAGAAGTAACAACATTAAGCCTGATGTCTTGCTTTTGACTTGTCTGCTCACGATGTATGCAAAATGTGGGGCTATGGATTTGGCCAAGGGTGTTTTTGATGAGATGCCGGTGAGAAGTGTTGTGTCGTGGAACTCTATGATCATGGGGTATGGATTACATGGGATTGGGGACAAAGCGCTTGAACTGTTCTTGGAGATGGAGAAGGCAGGCCAGCAACCAAATGATGCCACTTTTATCAGTGTGTTATCTGCATGTACGCATGCCGGAATGGTCATGGAGGGTTGGTGGTACTTTGATCTTATGCAAAGAGTTTACAAAATTGAGCCCAAGGTTGAACACTATGGTTGCATGGTTGATCTCCTGGCTCGAGCTGGTTTGGTGGAAAACTCAGAAGAGCTTATAAGGATGGTCCCTGTAAAGGCTGGATCTGCAATATGGGGAGCATTACTTTCTGGTTGTAGTAACCACTTGGACTCGGAGCTTGGAGAGATTGTAGCCAAGAGATTTATTGAGTTGGAGCCACAAGATATTGGCCCTTATATTTTGCTGTCAAATATGTATGCTGCTAAAGGTAGATGGGATGATGTTGAACATGTGAGATTGATGATAAAAGAAAAGGGGTTGCAGAAAGAAGCAGCATCCAGCTTGGTTCATCTTGAAGATTTTGAATCTAAATATGTTAAGAATAATTCAGGCTATAGGAAAAAGATAATGTACTCGATGTTGAGTGAATTAGGAACACAGATGAAATTATCTGTTGGACACTCAATTAAGGAAGACAATTTCATACCAAGATAA 1788 0.4614 MAVRGKHEVLFAALESWKNLHELNQVLSQLIVSGLSQHPLFATSAIKKLCSHSVTFPRATFLFDHLHHPDAFHCNTIIRAYARKPDFPAALRFYYCKMLARSVPPNHYTFPLLIKVCTDIGSFREGLKGHARIVKFGFGSDLFARNSLIRMYSVFGRIGNARMVFDESCWLDLVSYNSMIDGYVKNGEIGAARKVFNEMPDRDVLSWNCLIAGYVGVGDLDAANELFETIPERDAVSWNCMIDGCARVGNVSLAVKFFDRMPAAVRNVVSWNSVLALHARVKNYGECLMLFGKMVEGREAVPNEATLVSVLTACANLGKLSMGMWVHSFIRSNNIKPDVLLLTCLLTMYAKCGAMDLAKGVFDEMPVRSVVSWNSMIMGYGLHGIGDKALELFLEMEKAGQQPNDATFISVLSACTHAGMVMEGWWYFDLMQRVYKIEPKVEHYGCMVDLLARAGLVENSEELIRMVPVKAGSAIWGALLSGCSNHLDSELGEIVAKRFIELEPQDIGPYILLSNMYAAKGRWDDVEHVRLMIKEKGLQKEAASSLVHLEDFESKYVKNNSGYRKKIMYSMLSELGTQMKLSVGHSIKEDNFIPR 595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00649 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 369 403 IPR002885 -
Gma05g00649 595 Pfam E motif 486 545 IPR046848 -
Gma05g00649 595 Pfam PPR repeat family 369 415 IPR002885 -
Gma05g00649 595 Gene3D Tetratricopeptide repeat domain 233 333 IPR011990 GO:0005515
Gma05g00649 595 Gene3D Tetratricopeptide repeat domain 369 583 IPR011990 GO:0005515
Gma05g00649 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 70 105 IPR002885 -
Gma05g00649 595 Gene3D Tetratricopeptide repeat domain 143 232 IPR011990 GO:0005515
Gma05g00649 595 Pfam PPR repeat 206 232 IPR002885 -
Gma05g00649 595 Pfam PPR repeat 146 167 IPR002885 -
Gma05g00649 595 Pfam PPR repeat 236 262 IPR002885 -
Gma05g00649 595 Pfam PPR repeat 174 203 IPR002885 -
Gma05g00649 595 Pfam PPR repeat 343 368 IPR002885 -
Gma05g00649 595 Pfam PPR repeat 269 296 IPR002885 -
Gma05g00649 595 TIGRFAM PPR: pentatricopeptide repeat domain 174 204 IPR002885 -
Gma05g00649 595 TIGRFAM PPR: pentatricopeptide repeat domain 371 404 IPR002885 -
Gma05g00649 595 TIGRFAM PPR: pentatricopeptide repeat domain 236 261 IPR002885 -
Gma05g00649 595 Gene3D Tetratricopeptide repeat domain 10 132 IPR011990 GO:0005515
Gma05g00649 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 172 206 IPR002885 -
Gma05g00649 595 PANTHER OS01G0913400 PROTEIN-RELATED 265 585 - -
Gma05g00649 595 PANTHER OS01G0913400 PROTEIN-RELATED 13 263 - -
Gma05g00649 595 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 234 264 IPR002885 -
Gma05g00649 595 PANTHER - 265 585 - -
Gma05g00649 595 PANTHER - 13 263 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00649 Gma-Chr5 7174787 7176574 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00649 106 580 Glycoside Hydrolase AT3G49170 33.015 1.98e-80 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00649 - - gmx:100799232 1209.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00649 05 7174787 7176574 Gma05g00649 05 7174787 7176574 ECH