Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00553 ATGGGAACTCGAACAAATTTCTACAAGAACCCATCAATCTCCTACAAAAAACGTTTAAGCATCTCCTCCGTTCTTCAGAACCTCCATGCTTACAACATCGCCGCCGGcaatgttcctcccgccgatccaccgcaagcgacttccaccgccaatgttcctcccggcaatccaccgcatctcactccctccgccaGACTCAAACGCAGCCGGAATCCCGAGCCACCGGAATTTCTACGCGAATACCGTGACGATGCCCCTTCCTCTATGTCACACCACGATTACATCCAAAACAGAAGTCGTGATATCTTGTTCCTCACAAGGAAAGAAGTCGTTTCGTCTCGGAATCACGATCGCGTTGAATTGACTGAAGAAGTTTTGGGAAACTCTAATTCTACTCTTCCCTTGGTGGATTATGATGCAAgtgatgaagatactccttcagaatgtgaagaaacacatACTCTTCTAAATTCTGGTCAACAAGAAGAATTTGATGGAGTAAAAAAAAGCAGAAATGAGCAGCGATTCCCTGTCTCTGGGGAACCTGTTTGTCTTATATGTGGAAGATATGGCGAATATATATGCAACGAGACAGATGATGATGTCtgtagcatggaatgcaaaagtgaacttctggaaattcttaaactcaatgagggatcctcccacaaccaagttagagatatctcctcatctggaattagtgctgctgtaccagttccagtttttggtgatgatacctgggattataatcaacatcactggtccaaaaagacatgtagtctTTCTACTTATGAATGTTGGAAATGTCAAAGACCTGGCCACCTAGCTGAAGATTGTATGGTCACTGATGGAAGTAATAGATCTAGTTCCATTCCAAAGGATCTTCTTCAACTGTATAGAAGATGCCACCAGATTGGTAAAGACTTGTTAGCTGCAAACTGTAACGTGTGTCGCAGATCATCAAATTTGGCAACATGCCTTGATTGTAGTATTGTCCTTTGTGATGGGGCAGGCCACTTGATTGAGCATATAAGAACACACCCTTCCCATCAAAAATATTATTCACACAAGCTTAAACGTCTGGTTAAATGCTGCAAGTCAACATGCAAGGTCACTGACATCAAGGATCTCTTGGTTTGTCATTATTGCTTTGATAAAGCCTTTGAAAAGTTCTATGATATGTATACTGCAACATGGAAAGGAGCCGGGCTTGCAATTATGTGGGGTTCTATATGCTGTGAAGACCATTTCACCTGGCACAGAATGAATTGTTTGAATGCGAATGTGGAAGAAAGTGCATACATTTTAAAACCCGATGGCCATAAAGGCAAGCGTACGCAACTTAGTGACTTCATTTTTTGA 1365 0.3245 MGTRTNFYKNPSISYKKRLSISSVLQNLHAYNIAAGNVPPADPPQATSTANVPPGNPPHLTPSARLKRSRNPEPPEFLREYRDDAPSSMSHHDYIQNRSRDILFLTRKEVVSSRNHDRVELTEEVLGNSNSTLPLVDYDASDEDTPSECEETHTLLNSGQQEEFDGVKKSRNEQRFPVSGEPVCLICGRYGEYICNETDDDVCSMECKSELLEILKLNEGSSHNQVRDISSSGISAAVPVPVFGDDTWDYNQHHWSKKTCSLSTYECWKCQRPGHLAEDCMVTDGSNRSSSIPKDLLQLYRRCHQIGKDLLAANCNVCRRSSNLATCLDCSIVLCDGAGHLIEHIRTHPSHQKYYSHKLKRLVKCCKSTCKVTDIKDLLVCHYCFDKAFEKFYDMYTATWKGAGLAIMWGSICCEDHFTWHRMNCLNANVEESAYILKPDGHKGKRTQLSDFIF 454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00553 454 ProSiteProfiles Zinc finger CCHC-type profile. 267 280 IPR001878 GO:0003676|GO:0008270
Gma05g00553 454 MobiDBLite consensus disorder prediction 69 92 - -
Gma05g00553 454 SMART c2hcfinal6 266 282 IPR001878 GO:0003676|GO:0008270
Gma05g00553 454 PANTHER P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASES SUPERFAMILY PROTEIN ISOFORM 4 1 454 - -
Gma05g00553 454 MobiDBLite consensus disorder prediction 39 92 - -
Gma05g00553 454 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 1 454 - -
Gma05g00553 454 Gene3D - 163 222 - -
Gma05g00553 454 MobiDBLite consensus disorder prediction 46 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00553 Gma-Chr5 5456785 5463072 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00553 - - gsj:114412160 957.207
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00553 05 5456785 5463072 Gma05g00553 05 5456785 5463072 ECH