Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00312 ATGACACTTACGCTTTCACCTTTCTCCCCCACGCTCCTCACTCCGGCCACCACCCTCCGCCAACTCCTCTTCACTAACTTCACACCGTCTCCGAAACGCAGGCTCCTACTCCAAGCACGTGCGGCGAAGCCCAATGTCCTCATCCCCATAAACCCCTCGGTGACGGTGGAGAAAGGAAAGTACAGCTACGACGTGGAAACCCTAATCAACCGCCTCACCGCGCTTCCGCCACGTGGCAGCATCGCGCGCTGCCTTGACCCCTTCAAGAACAAGCTCTCCCTCAACGACTTCGCCCTCGTCTTCAAGGAGTTCGCGCAGCGTGGCGACTGGCAGCGCTCCCTGCGCCTCTTCAAGTACATGCAGCGCCAGATATGGTGCAAGCCCAACGAGCACATACACACCATCATGATCACGCTATTGGGCAGAGAGGGTCTTCTCGACAAGTGCCGCGAGGTGTTCGACGAAATGCCCTCCAACGGCGTCGTCCGCACCGTCTACTCCTACACCGCCATCATCAACGCCTACGGCCGCAACGGCCAGTTCCACGCCTCGCTCGAACTCCTCAACGGAATGAAGCAGGAGAGGGTTTCGCCGAGTATTTTGACTTACAACACTGTGATTAATGCTTGTGCTAGGGGTGGGTTGGATTGGGAAGGGTTGCTAGGGTTGTTTGCTGAAATGAGGCATGAAGGGATTCAGCCTGATGTTATTACTTACAATACTTTGCTTGGTGCTTGTGCTCATAGGGGGTTAGGTGATGAGGCTGAAATGGTGTTTAGGACCATGAATGAAAGTGGGATTGTTCCTGATATTAATACTTATAGTTATCTTGTTCAGACGTTTGGGAAGTTGAATAGGCTTGAGAAGGTTTCGGAGCTTCTTAGGGAGATGGAGTGCGGGGGTAATTTGCCGGATATTACTTCTTATAATGTGTTGTTAGAGGCTTATGCTGAGTTGGGGTCTATCAAAGAGGCGATGGGTGTGTTTAGGCAGATGCAGGCTGCGGGGTGTGTGGCGAACGCGGCCACTTATAGTGTTTTGTTGAATTTATATGGGAAGCATGGGAGGTATGATGATGTTCGCGATCTTTTTCTTGAGATGAAAGTGAGCAACACGGATCCTGATGCGGGGACTTACAACATTCTCATACAGGTCTTTGGGGAGGGTGGGTACTTTAAGGAGGTGGTCACTTTGTTTCATGACATGGCGGAGGAGAATGTTGAGCCGAACATGCAGACTTATGAGGGCTTGATATTTGCCTGTGGGAAGGGAGGGCTCTATGAAGATGCCAAGAAAATTTTACTGCATATGAATGAGAAAGGAGTAGTGCCGAGTTCCAAGGCTTATACTGGGGTGATTGAAGCGTTTGGGCAGGCTGCTTTGTATGAAGAGGCTCTTGTCATGTTTAACACTATGAATGAAGTTGGAAGCAACCCAACTGTTGAGACCTACAATTCGTTAATTCATGCATTTGCAAGGGGGGGACTGTACAAAGAAGCAGAAGCAATTTTATCCAGGATGAATGAGTCTGGTTTAAAACGGGATGTACATTCGTTCAATGGTGTGATTGAAGCTTTTAGGCAAGGAGGTCAGTATGAAGAGGCTGTAAAATCTTATGTTGAAATGGAAAAAGCAAATTGTGAACCTAATGAGCTGACACTTGAAGCGGTGTTAAGCATATACTGCTCCGCTGGTCTTGTTGATGAGGGCGAGGAGCAGTTCCAAGAAATTAAAGCTTCAGGAATACTGCCCAGTGTCATGTGCTACTGCATGATGCTAGCTCTTTACGCAAAGAATGACAGGTTAAATGATGCCTATAATTTGATTGATGCGATGATCACGATGAGGGTGTCAGATATTCATCAAGTAATTGGACAAATGATCAAGGGAGATTTTGATGATGAGTCTAATTGGCAGATTGTGGAGTATGTCTTTGACAAACTCAATTCTGAAGGGTGTGGATTGGGAATGAGGTTCTACAATGCACTGTTAGAAGCTCTTTGGTGCATGTTCCAGAGAGAAAGGGCTGCTAGAGTGCTCAACGAAGCATCAAAGCGAGGGCTGTTCCCTGAACTTTTTCGTAAAAGTAAACTTGTGTGGTCTGTGGATGTACACAGGATGTCGGAAGGTGGTGCATTAACAGCACTGTCAGTTTGGCTGAACAATGTGCATGAAATGTCCATGACCGGCGATGATCTTCCCGAGGTTGCAACAGTTGTTGTGGTCAGCCGGGGTCACATGGAGAAAACCACAGATGCCCAAGATTTCCCTATCGCAAAGGCTGCCATTTCATTCTTGCAGGATAATGTACCATCGTCCTTTGCTTTCCCTGGATGGAACAAAGGTCGCATTGTTTGTCAGCAGTCACAACTGAGACGAATTCTGTCGGGCACTGAATCATCATCTAGTAGAAAAAAAATGGATAAATTAATATCTTTAAGTAATACCCCATTGACTACTGCAGGAGCCATAACATCCAAATCTGATGCGCAAAGTGGTAAAGCTAATGGTGTTGATTCTAGAACCGATAGTACAAGAACAGAGCTTCTAACGAGTGCAATTTAG 2565 0.4733 MTLTLSPFSPTLLTPATTLRQLLFTNFTPSPKRRLLLQARAAKPNVLIPINPSVTVEKGKYSYDVETLINRLTALPPRGSIARCLDPFKNKLSLNDFALVFKEFAQRGDWQRSLRLFKYMQRQIWCKPNEHIHTIMITLLGREGLLDKCREVFDEMPSNGVVRTVYSYTAIINAYGRNGQFHASLELLNGMKQERVSPSILTYNTVINACARGGLDWEGLLGLFAEMRHEGIQPDVITYNTLLGACAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTFGKLNRLEKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVLLNLYGKHGRYDDVRDLFLEMKVSNTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEENVEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEALVMFNTMNEVGSNPTVETYNSLIHAFARGGLYKEAEAILSRMNESGLKRDVHSFNGVIEAFRQGGQYEEAVKSYVEMEKANCEPNELTLEAVLSIYCSAGLVDEGEEQFQEIKASGILPSVMCYCMMLALYAKNDRLNDAYNLIDAMITMRVSDIHQVIGQMIKGDFDDESNWQIVEYVFDKLNSEGCGLGMRFYNALLEALWCMFQRERAARVLNEASKRGLFPELFRKSKLVWSVDVHRMSEGGALTALSVWLNNVHEMSMTGDDLPEVATVVVVSRGHMEKTTDAQDFPIAKAAISFLQDNVPSSFAFPGWNKGRIVCQQSQLRRILSGTESSSSRKKMDKLISLSNTPLTTAGAITSKSDAQSGKANGVDSRTDSTRTELLTSAI 854
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00312 854 Pfam Pentatricopeptide repeat domain 152 210 IPR002885 -
Gma05g00312 854 Pfam Pentatricopeptide repeat domain 223 283 IPR002885 -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 375 409 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 202 236 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 378 410 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 413 445 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 518 551 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 237 271 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 273 305 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 343 376 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 132 164 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 166 199 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 483 515 IPR002885 -
Gma05g00312 854 TIGRFAM PPR: pentatricopeptide repeat domain 308 340 IPR002885 -
Gma05g00312 854 Pfam PPR repeat family 304 349 IPR002885 -
Gma05g00312 854 Pfam PPR repeat family 514 562 IPR002885 -
Gma05g00312 854 Pfam PPR repeat family 374 421 IPR002885 -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 480 514 IPR002885 -
Gma05g00312 854 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 38 816 - -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 270 304 IPR002885 -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 515 549 IPR002885 -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 340 374 IPR002885 -
Gma05g00312 854 Gene3D Tetratricopeptide repeat domain 543 618 IPR011990 GO:0005515
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 235 269 IPR002885 -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 445 479 IPR002885 -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 234 IPR002885 -
Gma05g00312 854 Gene3D Tetratricopeptide repeat domain 72 213 IPR011990 GO:0005515
Gma05g00312 854 Gene3D Tetratricopeptide repeat domain 214 316 IPR011990 GO:0005515
Gma05g00312 854 Gene3D Tetratricopeptide repeat domain 317 421 IPR011990 GO:0005515
Gma05g00312 854 Gene3D Tetratricopeptide repeat domain 426 542 IPR011990 GO:0005515
Gma05g00312 854 MobiDBLite consensus disorder prediction 822 854 - -
Gma05g00312 854 ProSiteProfiles Smr domain profile. 702 792 IPR002625 -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 164 198 IPR002885 -
Gma05g00312 854 PANTHER PLASTID TRANSCRIPTIONALLY ACTIVE CHROMOSOME 2-LIKE PROTEIN 38 816 - -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 550 584 IPR002885 -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 410 444 IPR002885 -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 305 339 IPR002885 -
Gma05g00312 854 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 129 163 IPR002885 -
Gma05g00312 854 SMART SMR_2 699 789 IPR002625 -
Gma05g00312 854 Pfam PPR repeat 483 512 IPR002885 -
Gma05g00312 854 Pfam PPR repeat 448 476 IPR002885 -
Gma05g00312 854 Pfam PPR repeat 588 615 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00312 Gma-Chr5 2869128 2876216 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00312 270 711 Glycosyltransferase AT1G05670 21.445 1.13e-26 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00312 - - gmx:100801366 1673.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00312 05 2869128 2876216 Gma05g00312 05 2869128 2876216 ECH