Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00299 ATGCAGACCATGCTACGAGCAAAGCAGATCACTGCACTTTCTAGCAGTGCTAGGACTTTTCTCATTGGTGGTTCGCGTTGTAATGCAGCAGATGGTAGTTCATGCTCTTGCACTGAGGATGAAATTTGTGTTTCTAGACGACAGCATATAAAAAATCATGTTTTACCTGCACAGAAGCCATCCTCCCTAGCATCCAAAGCTACTTCTGAGGTGGATGAAACATTGGTTTCAGAAAACTCAGTAAATGGGCCAGCTTGCTGCAAGGCTAAGGGTGTTGACCAATCTAGCTGTATTCAGCAAATCAGAACCCCACCCAACATCAGATCTTCAAACGTGAAACAGATTAAAAGGGAGAACTTTACCAGTGTTCATCCAAGACCATCTGTTTCTACCAATTCGAGGTCTAAGCGTGCTGGTCATCATCATAGTGGAAAGTGTAAAGGTGATAAATCAAATTTAGGTAAAGGTTTTAAGCATATTCCTTCTTCTGGGATGGAAAAGTCAGTGGTGTCTCCAAATATTCCTTTAAATAATCATGAACACAGAGCCTTTCCACAGAGAACAACAACAAAATCAAATCACATTGTGACAAATTTTGGTTCCTACATGCGTGCTTCAAACACACAGATGGTGGAAGTGGTTCCTACAATCAAGGAAAGTTTTAATAAACATCCCAGGGATCTGAAAATGTCAGCTAGAACTGCTCCAATGAACAGGCGTATTGTGGAAGTGGTTTCAGACATACTAAGGCAGTTAAGGTGGGGTCCCACTGCAGAAAAGGCTTTGTATAACCTGAATTTTTCAATGGATGCATATCAAGCTAACCAAATCTTGAAACAACTCCAAGACCCCTCAGTTGCTCTTGGTTTTTTTGACTGGTTAAGGCGACAACCAGGTTTCAGGCATGATGGACATACTTACACCACCATGGTTGGTATCCTGGGCCGTGCTAGAAGGTTTGATTCAATAAGCAAGTTGCTAGAGCAGATGGTAAAGGATGGATGCCAACCCAATGTTGTAACATACAACCGCCTTATTCATTGCTATGGCTGTGCAAACTACCTGAAAGAAGCACTGAATGTGTTCAATGAAATGCAGGAGGTGGGATGTGAGCCTGATCGTGTCACATACTGTACACTCATTGATATCCATGCTAAAGCTGGATTTATTGATGTTGCCATGTCTATGTATAAAAGAATGCAAGAAGCTGGTCTTTCTCCTGACACTTTTACTTACAGTGTTATAATCAATTGTCTTGGAAAAGCTGGCAATTTAGCTGCTGCCCACTGGCTCTTTTGTGAGATGGTTGAACATGGTTGTGTTCCTAATCTGGTCACCTACAATATCATGATTGCCTTGCAAGCTAAAGCAAGGAATTATGAGATGGCATTGAAACTATATCATGACATGCAGAATGCGGGATTTCAACCTGACAAAGTTACTTACAGCATAGTAATGGAGGCACTTGGCCATTGTGGTTATCTCGAGGAAGCTGAATCAGTTTTTGTTGAGATGCAACAGAAAAACTGGGTGCCAGATGAACCTGTTTATGGTCTTTTAGTAGACTTGTGGGGAAAGGCTGGTAACGTTGAGAAGGCTTCGGAATGGTATCAGGCTATGCTGAATGCAGGTTTACTTCCAAATGTACCTACTTGCAATTCCCTTCTCAGTGCATTCCTCAGGTTGCATCGATTGCCAGATGCTTATAATCTTGTCCAAAGCATGGTGGCTCTTGGCCTTAGACCTTCTTTGCAAACTTATACTTTGCTCCTTAGTTGCTGTACAGAGGCACAACCAGCACATGATATGGGATTTTTCTGTGAGCTCATGGCGGTTACTGGCCATCCTGCTCATGCATTTTTACTGTCTATGCCTGCAGCAGGACCTGATGGTCAAAATGTGCGGGATCATGTAAGCAAATTCTTGGATATGATGCACACCGAGGATAGAGAGGGCAAAAGGGGGCTTGTAGATTCAGTGGTGAATTTTCTAAACAAGTCTGGGCTCAAGGAGGAAGCTGGTTCAGTTTGGGAGGCTGCTGCACAAAGGAATGTGTATCCAGATGCTGTTAAGGAAAAAAGCTCTCGCTATTGGCTTATAAATCTTCATGTCATGTCTGATGGAACTGCTGTGACAGCATTGTCTAGGACACTTGCTTGGTTTCGCCAACGTATGCTGGTATCCGGGATTCGCCCTAGTCGGGTAGACATTATCACAGGATGGGGTCGTCGGAGCAAGGTGACAGGATCTTCTCTGGTGAGACAGGCAGTGCAGGACCTGTTGCACACATTCAGTTTCCCATTTTTGGCTGAAAAGGGAAATTCAGGGTGTTTTGTGGGATGTGGGGAGCCTCTTTGCCAATGGTTGAACCACTCTTATGTGGAAAGGATGCATTTACTGTAG 2403 0.4349 MQTMLRAKQITALSSSARTFLIGGSRCNAADGSSCSCTEDEICVSRRQHIKNHVLPAQKPSSLASKATSEVDETLVSENSVNGPACCKAKGVDQSSCIQQIRTPPNIRSSNVKQIKRENFTSVHPRPSVSTNSRSKRAGHHHSGKCKGDKSNLGKGFKHIPSSGMEKSVVSPNIPLNNHEHRAFPQRTTTKSNHIVTNFGSYMRASNTQMVEVVPTIKESFNKHPRDLKMSARTAPMNRRIVEVVSDILRQLRWGPTAEKALYNLNFSMDAYQANQILKQLQDPSVALGFFDWLRRQPGFRHDGHTYTTMVGILGRARRFDSISKLLEQMVKDGCQPNVVTYNRLIHCYGCANYLKEALNVFNEMQEVGCEPDRVTYCTLIDIHAKAGFIDVAMSMYKRMQEAGLSPDTFTYSVIINCLGKAGNLAAAHWLFCEMVEHGCVPNLVTYNIMIALQAKARNYEMALKLYHDMQNAGFQPDKVTYSIVMEALGHCGYLEEAESVFVEMQQKNWVPDEPVYGLLVDLWGKAGNVEKASEWYQAMLNAGLLPNVPTCNSLLSAFLRLHRLPDAYNLVQSMVALGLRPSLQTYTLLLSCCTEAQPAHDMGFFCELMAVTGHPAHAFLLSMPAAGPDGQNVRDHVSKFLDMMHTEDREGKRGLVDSVVNFLNKSGLKEEAGSVWEAAAQRNVYPDAVKEKSSRYWLINLHVMSDGTAVTALSRTLAWFRQRMLVSGIRPSRVDIITGWGRRSKVTGSSLVRQAVQDLLHTFSFPFLAEKGNSGCFVGCGEPLCQWLNHSYVERMHLL 800
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00299 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 443 477 IPR002885 -
Gma05g00299 800 PANTHER OS03G0856100 PROTEIN 4 800 - -
Gma05g00299 800 TIGRFAM PPR: pentatricopeptide repeat domain 551 583 IPR002885 -
Gma05g00299 800 TIGRFAM PPR: pentatricopeptide repeat domain 375 409 IPR002885 -
Gma05g00299 800 TIGRFAM PPR: pentatricopeptide repeat domain 305 339 IPR002885 -
Gma05g00299 800 TIGRFAM PPR: pentatricopeptide repeat domain 410 443 IPR002885 -
Gma05g00299 800 TIGRFAM PPR: pentatricopeptide repeat domain 480 514 IPR002885 -
Gma05g00299 800 TIGRFAM PPR: pentatricopeptide repeat domain 340 373 IPR002885 -
Gma05g00299 800 TIGRFAM PPR: pentatricopeptide repeat domain 516 549 IPR002885 -
Gma05g00299 800 TIGRFAM PPR: pentatricopeptide repeat domain 445 478 IPR002885 -
Gma05g00299 800 SMART SMR_2 697 789 IPR002625 -
Gma05g00299 800 Gene3D Tetratricopeptide repeat domain 402 473 IPR011990 GO:0005515
Gma05g00299 800 Gene3D Tetratricopeptide repeat domain 257 401 IPR011990 GO:0005515
Gma05g00299 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 373 407 IPR002885 -
Gma05g00299 800 Gene3D - 676 779 IPR036063 -
Gma05g00299 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 513 547 IPR002885 -
Gma05g00299 800 Pfam PPR repeat 404 436 IPR002885 -
Gma05g00299 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 338 372 IPR002885 -
Gma05g00299 800 Gene3D Tetratricopeptide repeat domain 485 603 IPR011990 GO:0005515
Gma05g00299 800 ProSiteProfiles Smr domain profile. 700 781 IPR002625 -
Gma05g00299 800 Pfam PPR repeat family 442 489 IPR002885 -
Gma05g00299 800 Pfam PPR repeat family 547 594 IPR002885 -
Gma05g00299 800 Pfam PPR repeat family 337 383 IPR002885 -
Gma05g00299 800 PANTHER BNAA07G31720D PROTEIN 4 800 - -
Gma05g00299 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 478 512 IPR002885 -
Gma05g00299 800 MobiDBLite consensus disorder prediction 101 134 - -
Gma05g00299 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Gma05g00299 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 548 582 IPR002885 -
Gma05g00299 800 MobiDBLite consensus disorder prediction 101 154 - -
Gma05g00299 800 SUPERFAMILY SMR domain-like 698 778 IPR036063 -
Gma05g00299 800 Pfam PPR repeat 516 544 IPR002885 -
Gma05g00299 800 Pfam PPR repeat 306 335 IPR002885 -
Gma05g00299 800 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 303 337 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00299 Gma-Chr5 2728689 2732217 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00299 229 673 Glycosyltransferase AT1G05670 23.579 1.23e-21 98.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00299 - - gmx:100785113 1500.72
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00299 05 2728689 2732217 Gma05g00299 05 2728689 2732217 ECH