Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00215 ATGAATCCTGAGAAGTTTACTCACAAGACTAATGAAGCTCTTGCGTCGGCCCACGAGCTCGCGATGAGTTCAGGCCACGCGCAATTGACTCCCATCCACTTGGCCCACGCGCTGATTTCCGATCCCAACGGCATCTTCGTGCTAGCGATAAACAGCGCGGGCGGCGGCGAGGAATCGGCACGCGCCGTGGAGCGAGTGTTGAACCAGGCTCTGAAGAAGCTACCCTGCCAGTCCCCTCCGCCGGACGAGGTGCCGGCGAGCACCAACCTCGTGAGGGCCATCAGGAGAGCACAGGCGGCGCAAAAATCACGTGGCGACACGCATTTGGCCGTTGATCAGTTGATCCTCGGAATCCTCGAAGACTCCCAAATCGGAGACCTGTTGAAGGAAGCGGGGGTTGCGGTGGCGAGGGTAAAATCGGAAGTGGATAAGCTTCGTGGGAAGGAAGGGAAGAAGGTTGAGAGCGCTTCCGGGGATACGAATTTCCAAGCTTTGAAGACTTATGGGCGTGACCTTGTTGAACAAGCGGGGAAGCTTGACCCTGTTATTGGCCGTGACGAAGAGATTAGAAGGGTTGTGAGGATTCTATCACGGAGGACTAAGAACAACCCGGTTCTCATTGGAGAACCGGGTGTGGGAAAAACTGCGGTTGTGGAAGGGTTGGCACAGAGGATAGTAAGAGGGGATGTTCCAAGCAACCTTGCTGATGTGAGGCTTATTGCGTTGGATATGGGGGCGTTGGTCGCGGGTGCCAAGTATAGAGGCGAGTTTGAGGAGCGGTTAAAGGCTGTTTTGAAGGAAGTGGAGGAGGCTGAGGGGAAGGTGATACTCTTCATTGATGAGATTCATTTGGTCCTTGGTGCTGGTAGAACTGAAGGCTCCATGGATGCTGCTAATCTATTCAAACCTATGCTTGCTCGCGGCCAGCTTAGGTGCATTGGTGCCACCACGCTTGAGGAGTACAGGAAGTATGTGGAGAAGGATGCTGCATTCGAGAGGAGGTTCCAACAGGTTTTTGTGGCGGAACCTAGTGTGGTTGATACCATTAGCATTCTTCGTGGCTTGAAAGAGAGATATGAAGGCCATCACGGTGTTAGAATTCAGGACCGTGCTTTGGTTATGGCAGCTCAATTGTCTAACCGGTATATAACTGGGCGTCATCTTCCTGACAAGGCAATTGATTTGGTTGACGAGGCTTGTGCAAATGTTAGGGTTCAACTTGATAGTCAGCCTGAGGAAATTGATAACCTTGAAAGGAAGAGAATGCAGCTAGAAGTGGAACTTCATGCTCTGGAGAAAGAGAAAGACAAGGCTAGCAAAGCCCGTCTTGTTGAAGTGCGGAAAGAACTTGATGACTTGAGGGACAAGCTTCAGCCTTTGATGATGAAGTACCGAAAAGAGAAAGAGAGGGTTGATGAGATTCGAAGGCTCAAGAAGAAAAGAGAAGAGCTTCTTTTTGCTTTACAAGAGGCTGAGAGAAGATATGATCTGGCTAGAGCTGCAGACCTGCGATATGGAGCAATTCAAGAGGTGGAAACTGCAATACAACAACTTGAAGGGAGCACTGAAGAGAATCTGATGTTGACTGAAACTGTTGGACCGGAGCAAATAGCTGAGGTTGTGAGCCGCTGGACCGGTATACCAGTTACAAGGCTTGGCCAAAATGAAAAAGAAAGATTGATTGGACTTGGTGACAGATTGCACAGCAGAGTTGTAGGACAAGACCAAGCTGTTAATGCTGTTGCTGAGGCTGTGTTGAGATCTAGAGCTGGGCTAGGAAGACCTCAACAACCAACTGGTTCATTCCTATTCCTTGGTCCAACTGGTGTTGGTAAAACTGAGCTTGCAAAGGCTCTTGCTGAGCAACTATTTGATAATGAAAACCAGTTGGTGAGAATTGATATGTCCGAATACATGGAGCAGCACTCGGTTTCAAGATTGATTGGTGCACCACCAGGGTATGTTGGACATGAGGAAGGTGGACAACTAACTGAAGCCGTAAGGCGAAGACCTTACAGTGTGGTGCTTTTTGATGAAGTGGAAAAGGCACATACATCTGTGTTCAATACTCTTCTTCAAGTTTTGGACGATGGGAGGTTAACTGATGGACAAGGCCGTACTGTGGACTTTAGAAACACTGTAATTATCATGACCTCAAATCTTGGAGCAGAGCACCTCCTCAGTGGACTTTCAGGAAAATGTACCATGCAAGTTGCTCGGGATCGGGTAATGCAGGAGGTGAGAAGGCAATTTAGGCCAGAATTGCTGAATCGACTTGATGAAATTGTGGTATTTGACCCCCTTTCACATGACCAATTGAGGAAGGTTGCAAGGCTACAAATGAAGGATGTAGCTAGTCGTCTTGCTGAGAAAGGAATTGCCTTGGCAGTCACTGATGCAGCACTAGACTATATACTTGCCGAGAGCTATGATCCGGTGTATGGTGCTAGACCAATAAGGAGGTGGCTTGAGAAGAAGGTGGTGACAGAGTTGTCTAGAATGCTTGTAAGAGAGGAGATTGATGAGAATTCAACGGTTTACATAGATGCTGGACCCAATGGGGGCGAGTTGGTCTACCGTGTAGAAAAGAATGGAGGGGTTGTTAATCCTACAACTGGGCAGAAGTCCGATATCTTGATTCAGATACCTAATGGACATGCACCTAAAACTGATGCTGTTCAAGCAGTCAAGAAGATGAAGATTGAGGAAATTGATGATGATGAAATGGAAGAGTGA 2736 0.4832 MNPEKFTHKTNEALASAHELAMSSGHAQLTPIHLAHALISDPNGIFVLAINSAGGGEESARAVERVLNQALKKLPCQSPPPDEVPASTNLVRAIRRAQAAQKSRGDTHLAVDQLILGILEDSQIGDLLKEAGVAVARVKSEVDKLRGKEGKKVESASGDTNFQALKTYGRDLVEQAGKLDPVIGRDEEIRRVVRILSRRTKNNPVLIGEPGVGKTAVVEGLAQRIVRGDVPSNLADVRLIALDMGALVAGAKYRGEFEERLKAVLKEVEEAEGKVILFIDEIHLVLGAGRTEGSMDAANLFKPMLARGQLRCIGATTLEEYRKYVEKDAAFERRFQQVFVAEPSVVDTISILRGLKERYEGHHGVRIQDRALVMAAQLSNRYITGRHLPDKAIDLVDEACANVRVQLDSQPEEIDNLERKRMQLEVELHALEKEKDKASKARLVEVRKELDDLRDKLQPLMMKYRKEKERVDEIRRLKKKREELLFALQEAERRYDLARAADLRYGAIQEVETAIQQLEGSTEENLMLTETVGPEQIAEVVSRWTGIPVTRLGQNEKERLIGLGDRLHSRVVGQDQAVNAVAEAVLRSRAGLGRPQQPTGSFLFLGPTGVGKTELAKALAEQLFDNENQLVRIDMSEYMEQHSVSRLIGAPPGYVGHEEGGQLTEAVRRRPYSVVLFDEVEKAHTSVFNTLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGAEHLLSGLSGKCTMQVARDRVMQEVRRQFRPELLNRLDEIVVFDPLSHDQLRKVARLQMKDVASRLAEKGIALAVTDAALDYILAESYDPVYGARPIRRWLEKKVVTELSRMLVREEIDENSTVYIDAGPNGGELVYRVEKNGGVVNPTTGQKSDILIQIPNGHAPKTDAVQAVKKMKIEEIDDDEMEE 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00215 911 CDD AAA 572 767 - -
Gma05g00215 911 SUPERFAMILY Double Clp-N motif 4 158 IPR036628 -
Gma05g00215 911 PANTHER CHAPERONE PROTEIN CLPB3, CHLOROPLASTIC 4 863 - -
Gma05g00215 911 Pfam AAA domain (Cdc48 subfamily) 598 762 IPR003959 GO:0005524|GO:0016887
Gma05g00215 911 Gene3D - 3 149 IPR036628 -
Gma05g00215 911 ProSiteProfiles Clp repeat (R) domain profile. 3 148 IPR004176 -
Gma05g00215 911 Pfam ATPase family associated with various cellular activities (AAA) 205 321 IPR003959 GO:0005524|GO:0016887
Gma05g00215 911 Gene3D - 151 344 IPR027417 -
Gma05g00215 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 162 546 IPR027417 -
Gma05g00215 911 Coils Coil 407 456 - -
Gma05g00215 911 SMART ClpB_D2_small_2 768 859 IPR019489 -
Gma05g00215 911 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 547 854 IPR027417 -
Gma05g00215 911 Gene3D - 768 867 - -
Gma05g00215 911 Coils Coil 254 274 - -
Gma05g00215 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 602 620 IPR001270 GO:0005524
Gma05g00215 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 647 665 IPR001270 GO:0005524
Gma05g00215 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 676 694 IPR001270 GO:0005524
Gma05g00215 911 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 709 723 IPR001270 GO:0005524
Gma05g00215 911 Pfam Clp amino terminal domain, pathogenicity island component 17 63 IPR004176 -
Gma05g00215 911 Pfam Clp amino terminal domain, pathogenicity island component 97 147 IPR004176 -
Gma05g00215 911 PANTHER ATP-DEPENDENT CLP PROTEASE 4 863 - -
Gma05g00215 911 CDD AAA 183 343 - -
Gma05g00215 911 SMART AAA_5 200 345 IPR003593 -
Gma05g00215 911 SMART AAA_5 598 742 IPR003593 -
Gma05g00215 911 ProSitePatterns Chaperonins clpA/B signature 2. 632 650 IPR028299 -
Gma05g00215 911 Gene3D - 345 545 IPR027417 -
Gma05g00215 911 Pfam AAA lid domain 345 444 IPR041546 -
Gma05g00215 911 Coils Coil 474 501 - -
Gma05g00215 911 Pfam C-terminal, D2-small domain, of ClpB protein 768 848 IPR019489 -
Gma05g00215 911 Gene3D - 551 767 IPR027417 -
Gma05g00215 911 ProSitePatterns Chaperonins clpA/B signature 1. 296 308 IPR018368 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00215 Gma-Chr5 1979113 1983585 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00215 K03695 - gmx:732632 1719.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00215 05 1979113 1983585 Gma05g00215 05 1979113 1983585 ECH