Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma05g00147 ATGTCATCAAAGCTTCAAGTTCAGCAGCTTAATCAGTTAAGGGAGATTTTCGGTCGATTTGACATGGACTCAGATGGAAGCCTAACAATGCTAGAGCTAGCAGCACTTCTTAGGTCTCTGGGGCTGAAGCCCTCGGGTGACCAAGTCCAAGCACTGTTAGCCAACATGGACTCAAACGCCAATGGCAAAGTGGAGTTTGATGAATTGATAAGAGCCATATTACCTGACATAAATGCACAGGTTTTGCTGAACCAAGAACAGCTCCTAGGGGTGTTCAAGTGCTTCGATCGCGACGGCAACGGTTACATATCGGCCGCAGAGTTGGCCGGGGCAATGGCCAAAATGGGCCAGCCACTCACGTACCGAGAGCTCACGGAGATGATCAAAGAGGCTGACACGGATGGGGATGGTGTTATTAGCTTCACTGAGTTTGCCACTATCATGGCTCGCTCTGCTTCTGATTTTCTAGGCCTCTCGTTCTGCTGA 486 0.4959 MSSKLQVQQLNQLREIFGRFDMDSDGSLTMLELAALLRSLGLKPSGDQVQALLANMDSNANGKVEFDELIRAILPDINAQVLLNQEQLLGVFKCFDRDGNGYISAAELAGAMAKMGQPLTYRELTEMIKEADTDGDGVISFTEFATIMARSASDFLGLSFC 161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma05g00147 161 ProSitePatterns EF-hand calcium-binding domain. 21 33 IPR018247 -
Gma05g00147 161 ProSiteProfiles EF-hand calcium-binding domain profile. 44 79 IPR002048 GO:0005509
Gma05g00147 161 Gene3D - 1 75 - -
Gma05g00147 161 Gene3D - 76 158 - -
Gma05g00147 161 PANTHER CALCIUM BINDING PROTEIN 4 159 - -
Gma05g00147 161 SUPERFAMILY EF-hand 5 150 IPR011992 -
Gma05g00147 161 SMART efh_1 87 115 IPR002048 GO:0005509
Gma05g00147 161 SMART efh_1 48 76 IPR002048 GO:0005509
Gma05g00147 161 SMART efh_1 123 151 IPR002048 GO:0005509
Gma05g00147 161 SMART efh_1 12 40 IPR002048 GO:0005509
Gma05g00147 161 ProSitePatterns EF-hand calcium-binding domain. 57 69 IPR018247 -
Gma05g00147 161 CDD EFh 87 149 IPR002048 GO:0005509
Gma05g00147 161 PANTHER CALCIUM-BINDING PROTEIN CML15-RELATED 4 159 - -
Gma05g00147 161 Pfam EF-hand domain pair 86 148 IPR002048 GO:0005509
Gma05g00147 161 Pfam EF-hand domain pair 11 72 IPR002048 GO:0005509
Gma05g00147 161 ProSitePatterns EF-hand calcium-binding domain. 132 144 IPR018247 -
Gma05g00147 161 ProSiteProfiles EF-hand calcium-binding domain profile. 8 43 IPR002048 GO:0005509
Gma05g00147 161 ProSitePatterns EF-hand calcium-binding domain. 96 108 IPR018247 -
Gma05g00147 161 ProSiteProfiles EF-hand calcium-binding domain profile. 83 118 IPR002048 GO:0005509
Gma05g00147 161 ProSiteProfiles EF-hand calcium-binding domain profile. 119 154 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma05g00147 Gma-Chr5 1451650 1452734 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma05g00147 9 158 EF-hand Containing Proteins AT1G18530 78.000 8.01e-85 244
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma05g00147 K13448 - gmx:100795885 300.441
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma05g00147 05 1451650 1452734 Gma05g00147 05 1451650 1452734 ECH