Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02061 ATGAATTCTCAAATTGCAAACACCATCGATATCAGGCTCCAACTCCCAAAACCCTTCTTCCCTCGCAAAATCCCTTTCCCCCTATTTCCTCACTCTTCACCTCGCTTTCTCACCACCACATTCCCCTCTCGCAACTTCTCAAATCGATGCAAACTCAGAATCACCGCTTCCAATTCTCTTTCCGACTCAACCAATCCCAACCAAGAGCAAGACGCCGAATCCGCTCAACTATTCGAGAAACTGAAGGAGGCGGAGAGGAAACGGATGAATGAGTTGGAGGAATTTGACAAGAAGGCGAATGTGCAGTTAGAGAGGCAGCTTGTGATGGCTTCTTCATGGAGCAGAGCTTTGTTGACTTTGCGTGGAAAACTGAAGGGAACGGAATGGGATCCTGAGAACTCACACAGGATAGACTACAGTGATTTTTTGAGACTTCTTGACTCTAATAATGTCCAGTTTATGGAGTATTCTAATTACGGTCAAACAATATCAGTTATTCTACCATATTACAAAAATGGGAAACCGACGGGAACTGAAGGAAATACTCAGGGTATTATTTTTCGGCGTCATCCAGTCAATATAATGCCAATTGATAGTTGGAATGATGTTTGGAGAAAGCTACATCAGCAAATTGTAAATGTTGATGTCATTAATGTGGATGCCGTGCCTGCTGAAATATACTCAACTATTGCAGTTGCAGTCATATGGTCTATGCGTCTTGCTCTGGCTGTTGGATTTTATGTGTGGATTGATAATTTGATGAGACCAATATATGCGAAGTTGATACCTTGTGATTTGGGAACTCCTAGCCAAAAAACTACACAGCCACTAAGAAGTCGTGCACTTGGATCTCTAGGCCAGAGTCGGGCTAAATTTATATCTGCAGAAGAAAGAACTGGTGTTACATTTGATGATTTTGCTGGCCAGGAATATATAAAGAATGAACTACAAGAGATTGTCCGAATTTTAAAGAATGATGAGGAGTTTCAAGACAAAGGAATTTATTGTCCAAAAGGTGTACTTCTTCATGGGCCTCCTGGAACTGGTAAAACTCTACTGGCTAAAGCCATAGCAGGTGAAGCAGGGTTGCCTTTTTTTGCAGCTAATGGCACGGATTTTGTAGAGATGTTTGTAGGGGTTGCTGCATCCCGTGTTAAAGACCTTTTTGCAAATGCAAGAGCATTTTCACCTTCTATAATCTTTATTGATGAGATAGATGCTATTGGTAGCAAGCGTGGAGGACCTGATATTGGCGGAGGAGGTGCTGAAAGGGAACAAGGTTTACTTCAGATACTGACTGAGATGGATGGATTCAAAGTTTCCACAGCACAGGTTCTCGTGATTGGTGCCACAAATAGATTGGATATTCTTGATCCTGCTCTATTGAGGAAAGGTCGTTTTGACAAGATCATTAGAGTTGGTTTGCCATCGGAGGATGGAAGATTTGCCATTTTGAAGGTGCATGCTAGGAATAAATTTTTTCGCTCTGAGGAGGAAAAGGAAACTCTACTTAAGGAAATTGCTGAACTGACAGAAGATTTTACTGGGGCAGAGCTACAAAATATACTGAATGAAGCTGGAATTTTGACAGCCAGGAAGGATTTGGACTACATTGGGCGAGATGAGCTGCTTGAGGCATTGAAGAGGCAAAAGGGAACATTTGAAACAGGGCAAGAGGATAGTACTGAAATTCCTGAAGAATTAAAATTGAGATTGGCATACAGAGAAGCAGCTGTTGCTGTTCTTGCATGTTTTTTCCCGGAGCCCCACCGTCCTTTTGTTGAGACTGATATAAATTCTATCCGCAGCCAGCCAAATATGCATTATGCTGAAATTTCTGGCCAGGTTTTTGCAAGGAAATCAGATTACATAAACTCTATAGTGCGTGCTTGTGCTCCAAGAGTAATTGAGGAGGAGATGTTTGGGATTGACAACTTGTGTTGGATCTCTGCAAAGGCAACATTAGAAGCTTCAAAGCATGCAGAGTTTTTAATTCTGCAGACAGGCATGACTGCTTTTGGGAAAGCATATTACAAAAACTATAGTGACCTTGTGCCCAATCTTGCAATGAAGCTTGAAGCACTTCGAGATGAGTATATGCGTTATGCCACAGAGAAGTGCTCATCTGTGCTAAAAGAGTACCATTTGGCTGTTGAGACAATCACAGATATTTTGCTTGAAAAGGGGCAAATCAAAGCTGAGGAGATTTGGGACATTTATAAGAGTGCTCCTCATGTAGCTCAGCCTCCTGTCAGTCCAGTTGATGAATTTGGAGCACTGATTTATGCTGGACGATGGGGAATCCATGGGATCAGTCTTCCCGGAAGGGTTACATTTGCACCAGGCAATGTTGGATTTGCGACCTTTGGTGCACCTCGCCCTACAGAGACACAAATTGTTAGTGATGAAACTTGGAAATTAGTAGATGATATCTGGGATAAAAAGGTTCAAAACATTAAAGATGAAGCTTCAATGGTGATTGAAGAAGAGAAGGAAAAGCCACAGCTTTTGATGGCGAGCCATTTTCTTTGA 2532 0.4202 MNSQIANTIDIRLQLPKPFFPRKIPFPLFPHSSPRFLTTTFPSRNFSNRCKLRITASNSLSDSTNPNQEQDAESAQLFEKLKEAERKRMNELEEFDKKANVQLERQLVMASSWSRALLTLRGKLKGTEWDPENSHRIDYSDFLRLLDSNNVQFMEYSNYGQTISVILPYYKNGKPTGTEGNTQGIIFRRHPVNIMPIDSWNDVWRKLHQQIVNVDVINVDAVPAEIYSTIAVAVIWSMRLALAVGFYVWIDNLMRPIYAKLIPCDLGTPSQKTTQPLRSRALGSLGQSRAKFISAEERTGVTFDDFAGQEYIKNELQEIVRILKNDEEFQDKGIYCPKGVLLHGPPGTGKTLLAKAIAGEAGLPFFAANGTDFVEMFVGVAASRVKDLFANARAFSPSIIFIDEIDAIGSKRGGPDIGGGGAEREQGLLQILTEMDGFKVSTAQVLVIGATNRLDILDPALLRKGRFDKIIRVGLPSEDGRFAILKVHARNKFFRSEEEKETLLKEIAELTEDFTGAELQNILNEAGILTARKDLDYIGRDELLEALKRQKGTFETGQEDSTEIPEELKLRLAYREAAVAVLACFFPEPHRPFVETDINSIRSQPNMHYAEISGQVFARKSDYINSIVRACAPRVIEEEMFGIDNLCWISAKATLEASKHAEFLILQTGMTAFGKAYYKNYSDLVPNLAMKLEALRDEYMRYATEKCSSVLKEYHLAVETITDILLEKGQIKAEEIWDIYKSAPHVAQPPVSPVDEFGALIYAGRWGIHGISLPGRVTFAPGNVGFATFGAPRPTETQIVSDETWKLVDDIWDKKVQNIKDEASMVIEEEKEKPQLLMASHFL 843
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02061 843 PANTHER INACTIVE ATP-DEPENDENT ZINC METALLOPROTEASE FTSHI 4, CHLOROPLASTIC-RELATED 38 812 - -
Gma04g02061 843 Gene3D - 476 556 - -
Gma04g02061 843 SUPERFAMILY FtsH protease domain-like 565 746 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma04g02061 843 SMART AAA_5 336 477 IPR003593 -
Gma04g02061 843 Coils Coil 67 94 - -
Gma04g02061 843 Pfam ATPase family associated with various cellular activities (AAA) 340 474 IPR003959 GO:0005524|GO:0016887
Gma04g02061 843 PANTHER METALLOPROTEASE M41 FTSH 38 812 - -
Gma04g02061 843 Gene3D Peptidase M41 558 745 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Gma04g02061 843 Coils Coil 493 520 - -
Gma04g02061 843 CDD AAA 337 475 - -
Gma04g02061 843 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 296 549 IPR027417 -
Gma04g02061 843 Pfam AAA+ lid domain 504 544 IPR041569 -
Gma04g02061 843 ProSitePatterns AAA-protein family signature. 445 463 IPR003960 GO:0005524|GO:0016887
Gma04g02061 843 Gene3D - 285 474 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02061 Gma-Chr4 51069545 51077412 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02061 270 584 Miscellaneous Gene Families AT3G47060 45.079 1.09e-67 238
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02061 - - gmx:100782783 1659.04
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02061 04 51069545 51077412 Gma06g01357 06 12750430 12758913 GST