Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g02002 ATGGTCATGGCAAAACTAAAACACCCTTCATCTTTTGTCACATTGGTGGCACTTCTTCTAGCAGTGTCTCTTTTCGTTGCTCCAACATCCTCAACATCCAGAAAAACTATTCTCAAGCACCACCCTTACCCAACAAAAGGGTTCCGAGTCATGCTTCGCCACGTTGATTCGGGTAAAAATTTAACCAAACTAGAGCGTGTCCAACACGGGATCAAGCGTGGGAAGAGTAGGCTTCAGAGGCTTAATGCAATGGTGTTGGCAGCATCAACACTAGATTCTGAAGATCAATTAGAAGCCCCTATTCATGCAGGGAATGGAGAATATTTAATGGAGTTAGCCATTGGAACCCCACCAGTGTCTTACCCTGCGGTTTTGGACACTGGCAGTGACCTTATTTGGACACAGTGCAAGCCTTGCACGCAGTGTTATAAACAACCAACACCCATTTTTGATCCCAAGAAGTCCTCTTCTTTTTCCAAGGTTTCATGTGGTAGCAGCTTGTGCAGTGCTGTGCCTTCTTCAACATGCAGTGATGGGTGTGAGTATGTTTATTCATACGGTGACTATTCAATGACACAAGGCGTTTTGGCCACTGAGACTTTCACTTTTGGGAAGTCTAAGAACAAAGTTTCGGTTCACAACATTGGTTTTGGTTGTGGGGAGGACAATGAAGGTGATGGATTTGAACAAGCTTCAGGGTTGGTTGGTCTTGGACGTGGTCCTTTGTCCTTGGTTTCTCAACTCAAGGAACCGAGATTTTCTTATTGTTTGACCCCAATGGATGACACAAAAGAAAGTATTTTGTTGTTGGGGTCTTTGGGTAAAGTGAAAGATGCAAAAGAAGTGGTGACAACACCTCTTCTCAAAAACCCTTTGCAACCTTCTTTTTACTATCTTTCTCTTGAAGGCATCTCTGTTGGGGACACTCGATTGTCCATTGAGAAGTCCACTTTTGAAGTGGGGGATGATGGGAATGGTGGTGTGATCATAGACTCTGGCACCACAATCACCTACATTGAACAAAAGGCCTTTGAGGCACTCAAAAAAGAGTTCATTTCTCAAACCAAACTTCCTTTGGACAAAACTAGCTCAACAGGGTTGGATCTTTGCTTCTCTCTGCCATCAGGGTCAACACAAGTGGAGATTCCAAAGATTGTTTTCCATTTCAAGGGTGGGGATTTGGAGCTTCCTGCTGAGAACTACATGATTGGTGACTCCAATTTGGGTGTGGCTTGTTTAGCCATGGGTGCTTCTAGTGGAATGTCTATATTCGGAAATGTTCAACTGCAGAACATTTTGGTGAATCATGATCTTGAAAAGGAGACCATTTCTTTTGTTCCTACGTCGTGTGATCAGCTGTGA 1362 0.4376 MVMAKLKHPSSFVTLVALLLAVSLFVAPTSSTSRKTILKHHPYPTKGFRVMLRHVDSGKNLTKLERVQHGIKRGKSRLQRLNAMVLAASTLDSEDQLEAPIHAGNGEYLMELAIGTPPVSYPAVLDTGSDLIWTQCKPCTQCYKQPTPIFDPKKSSSFSKVSCGSSLCSAVPSSTCSDGCEYVYSYGDYSMTQGVLATETFTFGKSKNKVSVHNIGFGCGEDNEGDGFEQASGLVGLGRGPLSLVSQLKEPRFSYCLTPMDDTKESILLLGSLGKVKDAKEVVTTPLLKNPLQPSFYYLSLEGISVGDTRLSIEKSTFEVGDDGNGGVIIDSGTTITYIEQKAFEALKKEFISQTKLPLDKTSSTGLDLCFSLPSGSTQVEIPKIVFHFKGGDLELPAENYMIGDSNLGVACLAMGASSGMSIFGNVQLQNILVNHDLEKETISFVPTSCDQL 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g02002 453 Pfam Xylanase inhibitor N-terminal 108 272 IPR032861 -
Gma04g02002 453 ProSiteProfiles Peptidase family A1 domain profile. 108 446 IPR033121 -
Gma04g02002 453 PRINTS Pepsin (A1) aspartic protease family signature 328 339 IPR001461 GO:0004190|GO:0006508
Gma04g02002 453 PRINTS Pepsin (A1) aspartic protease family signature 114 134 IPR001461 GO:0004190|GO:0006508
Gma04g02002 453 Gene3D Acid Proteases 88 271 IPR021109 -
Gma04g02002 453 CDD pepsin_A_like_plant 107 450 IPR034161 -
Gma04g02002 453 ProSitePatterns Eukaryotic and viral aspartyl proteases active site. 328 339 IPR001969 GO:0004190|GO:0006508
Gma04g02002 453 SUPERFAMILY Acid proteases 101 451 IPR021109 -
Gma04g02002 453 Pfam Xylanase inhibitor C-terminal 297 446 IPR032799 -
Gma04g02002 453 PANTHER OS07G0603500 PROTEIN-RELATED 20 452 - -
Gma04g02002 453 Gene3D Acid Proteases 273 453 IPR021109 -
Gma04g02002 453 PANTHER OS08G0469000 PROTEIN 20 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g02002 Gma-Chr4 50435678 50437531 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g02002 106 453 Miscellaneous Gene Families AT1G77480 28.198 1.28e-25 106
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g02002 - - gmx:100811294 869.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g02002 04 50435678 50437531 Gma04g02002 04 50435678 50437531 ECH