Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01941 ATGGCTCCTCCCAGAGGTGGTGGGTTCAGGGGTGGTAGGGGTGACAGAGGTAGAGGAAGGGGCGGTGGTGGAGGAAGAGGAGGAGACAGGGGCACGCCGTTCAAAGCTAGAggcggtggccgtggaggaggcagaggcggcggtggccgtggaggaggcaggggcggcggccgaggtggaATGAAGGGAGGTAGCAAGGTTGTGGTGCAGCCTCATAGACATGATGGTATTTTCATTGCCAAGGGTAAAGAAGACGCTCTTGTTACCAAGAATCTTGTTCCTGGTGAAGCTGTTTACAATGAAAAAAGGATTACCGTTCAGAACGAAGACGGTTCCAAAGATGAGTACAGAGTTTGGAATCCTTTCCGCTCGAAGTTGGCTGCTGCCATCCTTGGTGGAGTTGACAACATTTGGATTAAACCTGGAGCCAGAGTCCTTTACCTAGGAGCTGCTTCTGGGACCACTGTTTCTCATGTGTCGGATGTGGTTGGGCCTACTGGAGTTGTCTATGCAgtagagttttcccatagaagcggacgtgacttggtcaatatggcaaagaagcgaactaatgttatacccattattgaagatgctagacatccagctaagtacaggatgttggttggaatggttgatgtcatattttctgatgttgctcagcctgatcagGCAAGGATTTTGGGGCTGAATGCTTCATATTATCTAAAAGCAGGGGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCCACAGTCCCGGCTGAGGCAGTGTTTGAAAGCGAAGTGAACAAGTTAAAGGCTGATCAATTCAAACCATTCGAGCAAGTCACCCTTGAACCATTTGAGAGGGACCATGCGTGCGTTGTTGGCGGATACAGAATGCCCAAGAAGAAAAAAGATGCTGCTGAGTAG 921 0.3648 MAPPRGGGFRGGRGDRGRGRGGGGGRGGDRGTPFKARGGGRGGGRGGGGRGGGRGGGRGGMKGGSKVVVQPHRHDGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGSKDEYRVWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDVVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKAGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDAAE 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01941 306 MobiDBLite consensus disorder prediction 1 67 - -
Gma04g01941 306 Gene3D Vaccinia Virus protein VP39 120 297 IPR029063 -
Gma04g01941 306 Pfam Fibrillarin 69 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 5 304 - -
Gma04g01941 306 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 67 293 IPR029063 -
Gma04g01941 306 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 83 296 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 Gene3D Phosphorylase Kinase; domain 1 64 119 - -
Gma04g01941 306 PRINTS Fibrillarin signature 87 106 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 PRINTS Fibrillarin signature 115 134 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 PRINTS Fibrillarin signature 142 163 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 PRINTS Fibrillarin signature 167 184 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 PRINTS Fibrillarin signature 192 221 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 PRINTS Fibrillarin signature 222 251 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 PRINTS Fibrillarin signature 274 295 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 PANTHER FIBRILLARIN, S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASE-RELATED 5 304 - -
Gma04g01941 306 SMART Fibrillarin_2 69 297 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 PIRSF Nop17p 33 299 IPR000692 GO:0003723|GO:0006364|GO:0008168
Gma04g01941 306 ProSitePatterns Fibrillarin signature. 167 181 IPR020813 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01941 Gma-Chr4 49843758 49846463 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01941 K14563 - gmx:100797625 514.612
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01941 04 49843758 49846463 Gma06g01465 06 13991871 13995063 GST