Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01887 ATGAAGCTCGATACGACTAGTCTCGAATCGTTTCCCACACTGATTGCACCTCAAAACGACGTCGCCGGAGAACTCTCCGCCGCTCCGTTCTTTGACCTTCCGAATTCCAATGACTTCGATGGGTTCTTGAAAGACGCTATTCAGATGGTGAAGCCCGCGAAGGGTACTACAACTCTTGCTTTTATATTTAAAGAGGGTGTTATGGTAGCTGCTGATTCTCGAGCTAGCATGGGAGGATATATATCGTCGCAGTCTGTGAAGAAAATTATCGAAATCAATCCGTATATGCTTGGGACAATGGCTGGTGGTGCTGCTGATTGCCAGTTTTGGCACAGGAATCTCGGGATTAAGTGTCGTTTGCATGAGTTGGCAAATAAAAGGAGAATTTCAGTGACAGGAGCCTCAAAGCTACTTGCCAATATTTTATACTCTTATCGTGGAATGGGTTTATCTGTTGGTACCATGATTGCCGGATGGGATGAGACGGGCCCTGGTCTATATTATGTTGATAGTGAAGGAGGAAGACTTAAAGGCACTAGATTCTCGGTTGGATCTGGTTCACCATATGCTTATGGTGTATTGGATAGCGGGTACCGGTATGACCTGTCAGTTGAGGAAGCTGCTGAACTTGCTCGACGAGCAATTTATCATGCAACATTTCGTGATGGGGCCAGTGGTGGAGTTGCTAGCGTTTACTATGTGGGACCAAATGGATGGAAGAAACTGTCTGGTGATGATGTTGGGGAACTTCATTACCATTACTACCCAGTTACCCCAAGCACCGTGGAACAAGAAATGGTTGAGGCTACTGGTGCTTGA 819 0.4615 MKLDTTSLESFPTLIAPQNDVAGELSAAPFFDLPNSNDFDGFLKDAIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDSGYRYDLSVEEAAELARRAIYHATFRDGASGGVASVYYVGPNGWKKLSGDDVGELHYHYYPVTPSTVEQEMVEATGA 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01887 272 ProSitePatterns Proteasome beta-type subunits signature. 59 106 IPR016050 GO:0005839|GO:0051603
Gma04g01887 272 CDD proteasome_beta_type_5 56 243 - -
Gma04g01887 272 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 51 254 IPR029055 -
Gma04g01887 272 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 56 265 IPR029055 -
Gma04g01887 272 PRINTS Proteasome component signature 63 78 IPR000243 GO:0004298|GO:0005839|GO:0051603
Gma04g01887 272 PRINTS Proteasome component signature 184 195 IPR000243 GO:0004298|GO:0005839|GO:0051603
Gma04g01887 272 PRINTS Proteasome component signature 195 206 IPR000243 GO:0004298|GO:0005839|GO:0051603
Gma04g01887 272 PRINTS Proteasome component signature 220 231 IPR000243 GO:0004298|GO:0005839|GO:0051603
Gma04g01887 272 PANTHER PROTEASOME SUBUNIT ALPHA/BETA 29 271 - -
Gma04g01887 272 PANTHER PROTEASOME SUBUNIT BETA 29 271 - -
Gma04g01887 272 Pfam Proteasome subunit 54 234 IPR001353 GO:0005839|GO:0051603
Gma04g01887 272 ProSiteProfiles Proteasome beta-type subunit profile. 55 234 IPR023333 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01887 Gma-Chr4 49118906 49121777 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01887 K02737 - gmx:100778498 550.821
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01887 04 49118906 49121777 Gma06g01524 06 14688956 14692970 GST