Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01868 ATGCTTAAATCAACCTTCACTCCCATTTTCTGGGTACTTACCCCCAAACCCAAACCTCCAAAACTTCCCCCCCAGGCAATCACCAACACCTTCTTCACAAGCAGCACGACACATGTTCGACACAATGCCCCTCTCAACCCCACCACCCCACCACCCCCTTCTTCAGCCTACATTCACCTCCCTTTCTGCCGCAAACGCTGCCACTACTGCGACTTCCCCATCGTCGCCCTTGGCTCCGCCTCGACCCAAACCAACGACGACCCTCGTGTCTCCAACTACATCCACTGGCTCTGCCGGGAAATCAGTGCCACCAATGTGGACCAACCTGCTGATGCCAGCACCATCACACCCCTTAAAACGGTCTACTTTGGAGGCGGGACACCCTCGCTGGTGCCTCCTAGGATGGTTGCCTCGGTTTTGGACACTCTGAGGTTGAAGTTTGGGCTTCGTGAGGACGCCGAAATATCGATGGAAATGGACCCGGGCACGTTTGATGCTGAGAAGATGCGAGAGATGGTGGTGCTGGGAGTGAATAGAGTGTCCTTGGGAGTTCAGGCGTTTCAGGAGGAGCTGTTGAGAGCTTGTGGGAGGGCACATGGGCTGAAAGAGGTTCATGAGGCTATTGATGTTGTCAAGTTGTGTGGAGTTGAGAATTGGAGTATTGATCTTATATCTTCATTGCCTCATCAGACGAGTGAGATGTGGGAGGAAAGTCTAAGGCTCGCCATCGAGTCACAACCAACTCATGTCTCGGTTTATGACTTGCAAATTGAGCAAGGCACGAAATTTGGACGATTGTACTCCCCAGGGGAATTCCCAATGCCTTCTGAAACACAATCAGCTGAGTTCTATAAGATGGCTTCAAGAATGCTTTCTGATGCAAATTACAACCATTATGAAATCAGCAGCTACTGCAAGAGTGGATATGAGTGCAAACACAACTTTATCTATTGGAAGAACAAGCCTTTCTATGGCTTTGGCCTTGGCTCTACTAGCTTTGTTGGTGGGTTGAGGTTTTCAAGACCAAGAAAGGTGAACGATTACATTAATTTTGTGCAGAATCTAGAAAATGGATTAGTAAATAGCTCTGTTAAAGGCCACATTAGTGGCAAGGACACAATCATGGATGTGGTGATGCTGTCCCTAAGAACTGCACAAGGCATAGACTTAAAGAGTTTCCAAGAATCGTTTGGCAGCTCTGTTGTTTTGTCTTTGCTTGAGGCTTATAAACCTTATGTTGAGAGTGGACTTGTGGTTTGCTTGGACGAGCATAGGAGAACCATTAGAATAGATGACCTTAATTCTTCTTTGAGCAAAACTAATGCAGAGGGAAGGGTGGCTTATATAAGGCTAAGTGATCCAGAAGGTTTCCTTTTATCAAATGAGTTGATAGCCCTTGCTTTTGGGGTTATTGACTCTTGGAAGGATATGCCTCCGTACAAGGAAGCAGAAGCTACTTGA 1461 0.4736 MLKSTFTPIFWVLTPKPKPPKLPPQAITNTFFTSSTTHVRHNAPLNPTTPPPPSSAYIHLPFCRKRCHYCDFPIVALGSASTQTNDDPRVSNYIHWLCREISATNVDQPADASTITPLKTVYFGGGTPSLVPPRMVASVLDTLRLKFGLREDAEISMEMDPGTFDAEKMREMVVLGVNRVSLGVQAFQEELLRACGRAHGLKEVHEAIDVVKLCGVENWSIDLISSLPHQTSEMWEESLRLAIESQPTHVSVYDLQIEQGTKFGRLYSPGEFPMPSETQSAEFYKMASRMLSDANYNHYEISSYCKSGYECKHNFIYWKNKPFYGFGLGSTSFVGGLRFSRPRKVNDYINFVQNLENGLVNSSVKGHISGKDTIMDVVMLSLRTAQGIDLKSFQESFGSSVVLSLLEAYKPYVESGLVVCLDEHRRTIRIDDLNSSLSKTNAEGRVAYIRLSDPEGFLLSNELIALAFGVIDSWKDMPPYKEAEAT 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01868 486 SMART MiaB 53 286 IPR006638 GO:0003824|GO:0051536
Gma04g01868 486 SUPERFAMILY Radical SAM enzymes 40 426 - -
Gma04g01868 486 TIGRFAM hemN_rel: putative oxygen-independent coproporphyrinogen III oxidase 55 418 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Gma04g01868 486 ProSiteProfiles Radical SAM core domain profile. 48 294 IPR007197 GO:0003824|GO:0051536
Gma04g01868 486 Gene3D - 180 296 - -
Gma04g01868 486 PANTHER RADICAL S-ADENOSYL METHIONINE DOMAIN-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 470 - -
Gma04g01868 486 Pfam Radical SAM superfamily 58 241 IPR007197 GO:0003824|GO:0051536
Gma04g01868 486 SFLD HemN-like, clustered with heat shock genes 53 423 IPR004559 GO:0004109|GO:0005737|GO:0006779|GO:0051539
Gma04g01868 486 PANTHER COPROPORPHYRINIGEN III OXIDASE 1 470 IPR034505 -
Gma04g01868 486 SFLD Radical SAM 53 423 IPR007197 GO:0003824|GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01868 Gma-Chr4 48908520 48910426 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01868 - K07739 gmx:100779022 965.681
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01868 04 48908520 48910426 Gma04g01868 04 48908520 48910426 ECH
Gma04g01868 04 48908520 48910426 Gma06g01544 06 14889297 14890568 GST