Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01856 ATGGCGGAGAAGTTGGGAGCAGCAGAAGAGAGCTCTAATTCAAAGGCTTTTCACCATACGACGACGAAGCTCGTCGTTTTGGCAGACCTCAACGTCGATCCTCCCGAAGCCGAAGAAGTGGATTCTTCTCTTGTCCCTCCTCCACCAATTACCATTTTGGGAAATGATGAAAACAGTCAAGATAAAAGTTCGTTGTCTAAAGACACTGATAGCATTGAAGGTGAAAGTAAAAAGTTGAACAAACTGAGCAAATCCCGCTCCAGAAAGACAGATTCTTCTCTTGATTGTGTAGCTGATGTGGATGGCGATCAACATGTTCAAGGGCCTCCTTCATCTCGGGAGGAAAAAGTTAGCAGTGTGAAGACTGGCTTGGTTCATGTTGCAAGGAAGATGCCCAAAAATGCTCACGCTCATTTTATACTCGGCTTGATGTACCAAAGATTAAGCCAACCTCAAAAGGCTGTGTTAGCTTATGAGAAGGCAGAAGAGATCTTGCTGAGGCCTGAGGCTGAGATTGACAGGCCAGAGTTGCTTTCTTTAGTTCAGATTCACCATGCACAGTGCCTGATACTAGAAAGTTCATCAGAAAATAGTTCAGATaaagaacttgaacctcatgaacttgaagagattctttctaagctgaaacaGTCAGTGAGGTCAGATATCAGACAGACAGCTGTATGGAACACACTGGGTTTTATCCTTCTTAAAACTGGTCGTATGCAGAGTGCTATCTCAGTTTTGTCATCATTGTTGTCCATTGCACCTGAGAATTATGATTGCCTAGGAAATCTTGGGATAGCTTATCTTCAAATTGGGAATTTGGAATTATCTGCAAAATGTTTTCAAGAATTGATTTTAAAAGATCAAAACCATCCTGCAGCTTTGGTCAATTATGCTGCTCTTCTTTTGTGTAAATATGCTTCGGTTGTAGCAGGTCCTGGTGCAATTGCTGCTGAAGGTGCCTTGACTGATCAGATCATGGCTGCTAATGTTGCTAAGGAATGTTTGTTGGCTGCAGTTAAAGCAGATAGCAAATCGGCCCATGTCTGGGCAAATCTTGCCTATGCATTTTCTATTAGTGGTGATCATCGAAGTTCCAGCAAATGCTTGGAGAAGGCAGCCAAACTGGAACCCAATTGCATGTCTACTCGATATGCTGTTGCTATCCATCGAATAAAGGAGGCAGAAAGATCTCAAGATCCTACTGAACTGCTTTCTTGTGCTGGAAATGAGATGGCTTCTATAATAAGAGACAGTGATTCATCCCTGGTTGAGATTCCAATAGTATGGTCCGGGCTTGCCATGGTTCACAAGGCTCAGCATGAGATAGCGGCAGCATATGAAAGTGAACAGAATGGGCTAAGAGAAGTTGAAGAGCGTGCTGTTTGCAGTTTAAAGCAGGCTATAGCTGAAGATCCAAATGATGCTGTGCAGTGGCACCAACTTGGCGTTCATAGTCTCTGTGCTCGGCAATTCAAAACATCACAAAAGTACCTTAAAGCTGCTGTTGCCTGTGACAAGGATTGCAGCTATGCATGGTCTAACCTAGGTGTCTCACTTCAACTATCAGAAGAACCATCACAAGCTGAAGAAGTATACAAGCAAGCATTGTCTTTGGCAACAACTCAACAAGCGCATGCTATATTATCCAACTTGGGAATTCTCTATCGGCATCAGAAACAATATCAGCGTGCGAAGGCTATGTTTACAAAGTCACTTGAACTACAGCCTGGGTATGCTCTTGCATTCAACAATCTGGGTCTTGTGTTTGTTGCTGAGGGTCTTTTGGAAGAGGCCAAGTATTGTTTTGACAAAGCCCTCCAATCAGATTCATTGTTGGATGCAGCTAAGTCTAATTTGATTAAGGTGGTTGCCATGTCAAAGTTATGCAAAGGCCTCTCCTCATGCGGTCTTAAAGAATGA 1929 0.4215 MAEKLGAAEESSNSKAFHHTTTKLVVLADLNVDPPEAEEVDSSLVPPPPITILGNDENSQDKSSLSKDTDSIEGESKKLNKLSKSRSRKTDSSLDCVADVDGDQHVQGPPSSREEKVSSVKTGLVHVARKMPKNAHAHFILGLMYQRLSQPQKAVLAYEKAEEILLRPEAEIDRPELLSLVQIHHAQCLILESSSENSSDKELEPHELEEILSKLKQSVRSDIRQTAVWNTLGFILLKTGRMQSAISVLSSLLSIAPENYDCLGNLGIAYLQIGNLELSAKCFQELILKDQNHPAALVNYAALLLCKYASVVAGPGAIAAEGALTDQIMAANVAKECLLAAVKADSKSAHVWANLAYAFSISGDHRSSSKCLEKAAKLEPNCMSTRYAVAIHRIKEAERSQDPTELLSCAGNEMASIIRDSDSSLVEIPIVWSGLAMVHKAQHEIAAAYESEQNGLREVEERAVCSLKQAIAEDPNDAVQWHQLGVHSLCARQFKTSQKYLKAAVACDKDCSYAWSNLGVSLQLSEEPSQAEEVYKQALSLATTQQAHAILSNLGILYRHQKQYQRAKAMFTKSLELQPGYALAFNNLGLVFVAEGLLEEAKYCFDKALQSDSLLDAAKSNLIKVVAMSKLCKGLSSCGLKE 642
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01856 642 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN 8 639 - -
Gma04g01856 642 MobiDBLite consensus disorder prediction 1 20 - -
Gma04g01856 642 ProSiteProfiles TPR repeat profile. 226 259 IPR019734 GO:0005515
Gma04g01856 642 MobiDBLite consensus disorder prediction 35 119 - -
Gma04g01856 642 SMART tpr_5 226 259 IPR019734 GO:0005515
Gma04g01856 642 SMART tpr_5 478 511 IPR019734 GO:0005515
Gma04g01856 642 SMART tpr_5 582 615 IPR019734 GO:0005515
Gma04g01856 642 SMART tpr_5 349 382 IPR019734 GO:0005515
Gma04g01856 642 SMART tpr_5 548 581 IPR019734 GO:0005515
Gma04g01856 642 SMART tpr_5 429 462 IPR019734 GO:0005515
Gma04g01856 642 SMART tpr_5 512 545 IPR019734 GO:0005515
Gma04g01856 642 SMART tpr_5 135 168 IPR019734 GO:0005515
Gma04g01856 642 SMART tpr_5 260 293 IPR019734 GO:0005515
Gma04g01856 642 MobiDBLite consensus disorder prediction 61 98 - -
Gma04g01856 642 ProSiteProfiles TPR repeat profile. 349 382 IPR019734 GO:0005515
Gma04g01856 642 Gene3D Tetratricopeptide repeat domain 548 625 IPR011990 GO:0005515
Gma04g01856 642 Pfam Tetratricopeptide repeat 236 295 - -
Gma04g01856 642 Gene3D Tetratricopeptide repeat domain 319 416 IPR011990 GO:0005515
Gma04g01856 642 PANTHER TETRATRICOPEPTIDE REPEAT (TPR)-CONTAINING PROTEIN-RELATED 8 639 - -
Gma04g01856 642 Gene3D Tetratricopeptide repeat domain 460 547 IPR011990 GO:0005515
Gma04g01856 642 SUPERFAMILY TPR-like 341 541 IPR011990 GO:0005515
Gma04g01856 642 Pfam Tetratricopeptide repeat 514 578 - -
Gma04g01856 642 ProSiteProfiles TPR repeat profile. 548 581 IPR019734 GO:0005515
Gma04g01856 642 SUPERFAMILY TPR-like 227 612 IPR011990 GO:0005515
Gma04g01856 642 Gene3D Tetratricopeptide repeat domain 121 308 IPR011990 GO:0005515
Gma04g01856 642 Pfam Tetratricopeptide repeat 349 382 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01856 Gma-Chr4 48706430 48712013 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01856 463 614 Glycosyltransferase AT3G04240 25.490 4.71e-08 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01856 - - gmx:100820184 1229.16
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01856 04 48706430 48712013 Gma04g01856 04 48706430 48712013 ECH
Gma04g01856 04 48706430 48712013 Gma06g01553 06 15074411 15079938 GST