Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01843 ATGGGTGGATCAATTTCAAAACGGAGGCGTTCTAAGCAACATTCGTCAAATTTTTTTCCTCGGTATCAGCAACCTCATTTCCCACAAAGCCAAGATAATGGGTCTGTGGGGCATTATGGGTATTCACCTCAGAGCTATGGTGGTGGTCGTGCTCCAGAACAAGGAAAGAGCTTGGATAGGAAGTATTCAAGGATAGGTGATGATTATAAGAGCTTGGACCAGGTAACTGATGCTCTGGCAAAAGCTGGCTTAGAGTCTTCAAATCTGATTGTTGGGATTGATTTTACGAAGAGCAATGAGTGGACAGGTGGAAGGTCATTTCAAAGGAGATGCCTGCATCACATTGGTCATGAACAAAATCCATATGAACAAGCTATATCTATCATTGGGAAAACATTGTCTTCCTTTGATGAGGATAACTTAATTCCCTGTTTTGGTTTTGGAGATGCATCAACACATGACCAGGAAGTTTTTAGTTTCTATCCGGATGAGAGATTTTGTCGTGGATTTGAAGAAGTGTTGGAACGGTACAGGGAGTTGGTCCCTCAATTAAAGCTTGCAGGACCAACATCATTTGCCCCAGTCATTGAGATGGCAATCACCATAGTTGAGCAAAGTGGAGGCCAATACCATGTGTTAGTGATTATAGCTGATGGGCAGGTGACGAGAAGTGTTGACACTGAGCATGGGCAGTTGAGTGCACAAGAAAAGAAAACTGTAGAAGCTATTGTGAAAGCTAGTGAATATCCCTTGTCAATCATATTAGTTGGAGTTGGAGATGGGCCGTGGGATATGATGAAACAATTTGATGATAACATCCCTGCCCGAGCATTTGATAATTTCCAGTTCGTGAATTTCACAGAAATAATGTCAAAGAACATGGATCGGTCCAGAAAGGAAACGGAGTTTGCACTCGCTGCCTTGATGGAAATACCCTCCCAGTACAAGGCAACACTAGAGCTTAATATATTGGGTGCTTGTAGAGGGAAAGATATAGACCGGATTCCTCTCCCACCGCCTCTATATGGTGCAGCATCTTTCAATTCCCCCAAAACTTCCCGTCAATATAGTTCTCGTCCCAGTGCACCATCTAGCAGACATGATGTTAGCACAAACCCTCCTGCAACTTCTGCTTCTGATAATCAGGTTTGTCCCATTTGCCTCACCGATCCTAAGGATATGGCCTTCGGTTGCGGGCATCAGACATGCTGTGATTGCGGACAAGATCTTGAGTTATGCCCCATTTGCAGGAGTACCATTGATACTAGAATAAAACTTTATTAG 1284 0.4346 MGGSISKRRRSKQHSSNFFPRYQQPHFPQSQDNGSVGHYGYSPQSYGGGRAPEQGKSLDRKYSRIGDDYKSLDQVTDALAKAGLESSNLIVGIDFTKSNEWTGGRSFQRRCLHHIGHEQNPYEQAISIIGKTLSSFDEDNLIPCFGFGDASTHDQEVFSFYPDERFCRGFEEVLERYRELVPQLKLAGPTSFAPVIEMAITIVEQSGGQYHVLVIIADGQVTRSVDTEHGQLSAQEKKTVEAIVKASEYPLSIILVGVGDGPWDMMKQFDDNIPARAFDNFQFVNFTEIMSKNMDRSRKETEFALAALMEIPSQYKATLELNILGACRGKDIDRIPLPPPLYGAASFNSPKTSRQYSSRPSAPSSRHDVSTNPPATSASDNQVCPICLTDPKDMAFGCGHQTCCDCGQDLELCPICRSTIDTRIKLY 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01843 427 SUPERFAMILY vWA-like 87 270 IPR036465 -
Gma04g01843 427 MobiDBLite consensus disorder prediction 1 57 - -
Gma04g01843 427 Gene3D von Willebrand factor, type A domain 68 303 IPR036465 -
Gma04g01843 427 SUPERFAMILY RING/U-box 378 423 - -
Gma04g01843 427 SMART VWA_4 86 289 IPR002035 -
Gma04g01843 427 CDD vWA_copine_like 65 315 IPR010734 -
Gma04g01843 427 PANTHER COPINE FAMILY PROTEIN 1 1 427 - -
Gma04g01843 427 MobiDBLite consensus disorder prediction 346 379 - -
Gma04g01843 427 MobiDBLite consensus disorder prediction 16 40 - -
Gma04g01843 427 Pfam Copine 111 324 IPR010734 -
Gma04g01843 427 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 362 427 IPR013083 -
Gma04g01843 427 Pfam Zinc finger, C3HC4 type (RING finger) 381 422 - -
Gma04g01843 427 ProSiteProfiles Zinc finger RING-type profile. 384 417 IPR001841 -
Gma04g01843 427 CDD RING-HC_RGLG_plant 383 427 IPR045317 GO:0061630|GO:0070534
Gma04g01843 427 PANTHER RING-FINGER PROTEIN 1 427 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01843 Gma-Chr4 48527043 48531083 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01843 K16280 - gmx:100809850 878.241
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01843 04 48527043 48531083 Gma04g01843 04 48527043 48531083 ECH
Gma04g01843 04 48527043 48531083 Gma06g01567 06 15221155 15224811 GST