Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01794 ATGACGACTAACTCCGATTCTTCTTCTGCTCCTCTCCACTGGAAGTTCTCCCAAGTACTCGGCCAGCGACTTCCCAACGAGCCTCTCCAAAACGACGACATCATAACCGCCGTTGCGTTCGAGAAACGCGGCGATTACCTCGCCGTCGGCGACCGAGGTGGGCGCGTTGTGATATTCGAACGCGACGATCGGAAAAAGAATGTGAGTATCGCGAATGACCGAAGAGAACTGGAGCAGCGGGATTTCGCGACTTCGCGGCATCCCGAATTTCGTTTCAAAACGGAATTTCAGAGCCACGAGCCCGAGTTTGATTACCTGAAGAGTGTGGAAATTGAAGAGAAGATTAACAAAGTAAGGTGGTGGATGTCCAACGACAGTTTGCAATTTATTCTTTCAACCAACGACAAAACAATTAAATTGTGGAAGGTTAAGGAACATAAGGTAAAACAAGTTAAAGAAATGGCCCCTCCTTTATGCTCAGAAAATATGCTTTTGGCTGAAAGAAGTTTCGTACCAGGGCTGGAAACCACGGCTAATGGCTATCATTTGGAATGGATAGAGAAGACACCTAAGAATCATTTGCTGCCTCAAGACATTGATGGCGAGATTGGTGGAATGGAAGACCCTATCCGTGCAAAGTGCCAAAAAGTGTATGCTTATGCTCACAGTTTCAATATTAACTCCATCTCAAATAATAGTGATTATGAGACCTTCATCTCGGCAGATGACCTTAGAATCAATTTGTGGAATCTTGAAGTCAGTGATCAGTGTTTCAATATTATTGACATGAAGCCATCAAACATGGAGGATCTTACCGAGGTTATAACAGCAGCTGAATTTCATCCTTTGCATTGTAACCTCCTGGCATATAGCAGCTCACAAGGTTTTATTCGTCTATCTGATTTGCGACAGGCAGCAATATGTGACCATGCTTCTAGAATGTTTCAACATGGAGAGAGTTCTGGATCAAAGTCATTTTTTACAGAAATCACTTCTTCCATCTCAGACATAAAGTTTTTAAATGATGGCCAGCATCTTATAAGTCGCAATTACATGAATATGAAGCTTTGGGACATGCGTATGGAATCATCTCCAGTCGCAATATTCAAAATTCACGAGCATCTGCGTCCTAAGTTGCCAGAGTTATATAATAATGACTGCATATTTGACAAATTCGAGTGCTGCTTTAGTGGTGATGGACTCCATTTTGCAACTGGTTCTTATAGCAATGTCGTGCGGATATTCTCCCCGGGTTCTGAAAGGAAGGAAGAGATCAAACTAGAAATTAGAGGAAATTCTCACAGGAAGGTTATTCACCAAGCTAAGTCTCGAGTTAGAAGGCCTTCTCTAAGCAACCTAATACCTCGTGAAATTTACCAGCATGCTCACACTGATTCAGAGTCTAGTAGAGCTGACTTTTCTTGTAACTTAAGCTCCAAGCTGCTACATGTAGCATGGCATCCTACATGCAATCTAGTTGTATGTGCTGCTGAAAGTAGCCTAGTATTATATTATGCGTAG 1521 0.426 MTTNSDSSSAPLHWKFSQVLGQRLPNEPLQNDDIITAVAFEKRGDYLAVGDRGGRVVIFERDDRKKNVSIANDRRELEQRDFATSRHPEFRFKTEFQSHEPEFDYLKSVEIEEKINKVRWWMSNDSLQFILSTNDKTIKLWKVKEHKVKQVKEMAPPLCSENMLLAERSFVPGLETTANGYHLEWIEKTPKNHLLPQDIDGEIGGMEDPIRAKCQKVYAYAHSFNINSISNNSDYETFISADDLRINLWNLEVSDQCFNIIDMKPSNMEDLTEVITAAEFHPLHCNLLAYSSSQGFIRLSDLRQAAICDHASRMFQHGESSGSKSFFTEITSSISDIKFLNDGQHLISRNYMNMKLWDMRMESSPVAIFKIHEHLRPKLPELYNNDCIFDKFECCFSGDGLHFATGSYSNVVRIFSPGSERKEEIKLEIRGNSHRKVIHQAKSRVRRPSLSNLIPREIYQHAHTDSESSRADFSCNLSSKLLHVAWHPTCNLVVCAAESSLVLYYA 506
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01794 506 PANTHER PROTEIN PHOSPHATASE PP2A REGULATORY SUBUNIT B 7 506 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 Pfam WD domain, G-beta repeat 213 250 IPR001680 GO:0005515
Gma04g01794 506 SUPERFAMILY WD40 repeat-like 31 503 IPR036322 GO:0005515
Gma04g01794 506 SMART WD40_4 320 358 IPR001680 GO:0005515
Gma04g01794 506 SMART WD40_4 362 416 IPR001680 GO:0005515
Gma04g01794 506 SMART WD40_4 22 60 IPR001680 GO:0005515
Gma04g01794 506 SMART WD40_4 254 301 IPR001680 GO:0005515
Gma04g01794 506 SMART WD40_4 102 142 IPR001680 GO:0005515
Gma04g01794 506 SMART WD40_4 466 506 IPR001680 GO:0005515
Gma04g01794 506 SMART WD40_4 211 250 IPR001680 GO:0005515
Gma04g01794 506 PIRSF PPA2_B55 2 506 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 Gene3D - 66 504 IPR015943 GO:0005515
Gma04g01794 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 39 59 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 118 146 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 222 249 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 250 277 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 278 306 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 307 334 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 335 362 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 363 388 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 389 415 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 PRINTS Protein phosphatase PP2A 55kDa regulatory subunit signature 475 504 IPR000009 GO:0000159|GO:0019888
Gma04g01794 506 PANTHER OS02G0617600 PROTEIN 7 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01794 Gma-Chr4 47943999 47951451 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01794 K04354 - gmx:100795137 1002.66
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01794 04 47943999 47951451 Gma04g01794 04 47943999 47951451 ECH