Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01619 ATGGCCAAGTTTGATGTTGTTCCTAATGGTCATGCTTATAATTCTTTGATTCATGGGTATTGCAAGGCGGGGGACTTGCTCGAAGCGATGTGGTTGCGATTGGAGATGGAAAGGTGTGGAATCTTCTCAGATGTTGTCACATACAATATACTCATCAAGGGTCTGTGTGACATATGCAGATTGGAAGAAGCTATGGGTTTGATGGAGAAAATGGATGAAGTTGAGGTTTTTGCCAATTCTGTGATTCAATGTGGTAATGTAAGAGCTGCAATGGGCTTGTACACGGAAATGGTAATCAAGGGTATTGTGCCTGATGTGGTAACTTACACAGCTTTGATTGATGGGCACTGCAAGGTTGGGAACACCAAAGAGGCTTTCAGGTTGCATAAGGAGATGCTGGATGCAGGACTATCTCCCAATATGTTCACAGTTAGTTGTGTAATTGATGGCCTTTTGAAAGATGGAAGGACAAATGATGCAATCAAAATGTTCTTGGAGAAAACTGGAGCTGGTTACCCTGGAGATAAAATGGATAGCAGTGTGAACAAGTTGGTTCATGGCGACATCTCAACGTGGCATCAGAAAGCTGAGACTCCCATTAGCCTCAAACCACCAAAAGCCAACCAAACCCTTAAGAAGCACCTTGAATGCAACATACACACCAAGGTGCTTCTTCTCTTCAGATTCTTCTTAAGAAAAAGACCCACTCTTAACCTTATTGACAGCTATTCTTTGTTGTATGCCCTAAAAGCTTGCAACCACAAACACTCCTCCACCCAAGGAAAACAACTTCATGCCCTCATCATAAAATTTGGGTACCAAACCATAGTTCAACTCCAGATAACCCTTTTGAAAACATATGCGCAACGCGTACATGGGCAAGCACGCGAGGCTCTTCAACTTTTCTCAGAAATGAGGGACAAGGATGATTGTGTCTTGACCCCAAATGATGTAACTTTCATCGGAGTTTTAATGGCCTGCAGCCATGCAGGGATGGTTGAGGAAGGGAAGTTGCATTTCAGAAAGGTGGGTGGGCATTTGAGAGATTCCTATGACTTCATTATGGAGATGCCAGTGCCGCCAAATGCAGTTGTCTGGCGAACCTTGCTGGGGGCTTGTAGTGTCCGTGGTGAATTAGAGCTAGCTGCGGAAGTGAGGCAAAAGCTACTCAAGCTGGACCTTGGCTATGTGGTTGACAGTGTTGCTATGTCTAATATTTATGCCAATAAAGGCATGTGGAATAAGAAGATAGTTGTTAAGAATCAGATAAAACAGTCAAGGGCTCCTGGCTGCAGCTCAATTGAGGTGGGAAGTGGGGTTAGTGAATTTGTTGTCTCAGATGATAATCATCCTTTAATGACAGATAAGTGA 1371 0.4362 MAKFDVVPNGHAYNSLIHGYCKAGDLLEAMWLRLEMERCGIFSDVVTYNILIKGLCDICRLEEAMGLMEKMDEVEVFANSVIQCGNVRAAMGLYTEMVIKGIVPDVVTYTALIDGHCKVGNTKEAFRLHKEMLDAGLSPNMFTVSCVIDGLLKDGRTNDAIKMFLEKTGAGYPGDKMDSSVNKLVHGDISTWHQKAETPISLKPPKANQTLKKHLECNIHTKVLLLFRFFLRKRPTLNLIDSYSLLYALKACNHKHSSTQGKQLHALIIKFGYQTIVQLQITLLKTYAQRVHGQAREALQLFSEMRDKDDCVLTPNDVTFIGVLMACSHAGMVEEGKLHFRKVGGHLRDSYDFIMEMPVPPNAVVWRTLLGACSVRGELELAAEVRQKLLKLDLGYVVDSVAMSNIYANKGMWNKKIVVKNQIKQSRAPGCSSIEVGSGVSEFVVSDDNHPLMTDK 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01619 456 TIGRFAM PPR: pentatricopeptide repeat domain 46 74 IPR002885 -
Gma04g01619 456 TIGRFAM PPR: pentatricopeptide repeat domain 12 44 IPR002885 -
Gma04g01619 456 TIGRFAM PPR: pentatricopeptide repeat domain 107 140 IPR002885 -
Gma04g01619 456 Gene3D Tetratricopeptide repeat domain 205 436 IPR011990 GO:0005515
Gma04g01619 456 Pfam PPR repeat 292 308 IPR002885 -
Gma04g01619 456 Gene3D Tetratricopeptide repeat domain 1 76 IPR011990 GO:0005515
Gma04g01619 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 44 78 IPR002885 -
Gma04g01619 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 9 43 IPR002885 -
Gma04g01619 456 PANTHER OSJNBA0060P14.6 PROTEIN 84 172 - -
Gma04g01619 456 PANTHER OSJNBA0060P14.6 PROTEIN 1 82 - -
Gma04g01619 456 Pfam PPR repeat family 104 153 IPR002885 -
Gma04g01619 456 Pfam PPR repeat family 8 57 IPR002885 -
Gma04g01619 456 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 105 139 IPR002885 -
Gma04g01619 456 Gene3D Tetratricopeptide repeat domain 77 199 IPR011990 GO:0005515
Gma04g01619 456 PANTHER ATPASE EXPRESSION PROTEIN 3 84 172 - -
Gma04g01619 456 PANTHER ATPASE EXPRESSION PROTEIN 3 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01619 Gma-Chr4 44049790 44053243 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01619 106 451 Glycoside Hydrolase AT3G49170 27.228 3.32e-33 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01619 - - pvu:PHAVU_009G185600g 385.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01619 04 44049790 44053243 Gma04g01619 04 44049790 44053243 ECH