Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01571 ATGGCGGTTCAGAGCTCCACTTCCAGCGAATCGCAAGCTTCGGAGAACGTTATGCATCGCCATTTCTTTTTATGGAGAGAGTTTCTGTGGGGAGCTGTTGCGGGTGCATTTGGGGAAGGAATGATGCATCCAGTGGATACTGTTAAAACTCGATTACAAAGTCAAGCTATTCTAAATGGAATTCAGAACCAGAAAAACATATTGCAGATGGTGCGATATGTGTGGCAGGTTGATGGATTAAAAGGCTTTTACAGGGGTGTAACACCTGGTATTATTGGATCTCTTGCTACTGGCGCAACATATTTTGGTGTCATAGAGTCCACAAAAAAGTGGATTGAGGATTCACATCCTAGCCTTAGGGGCCACTGGGCACATTTCATTGCTGGAGCTGTTGGTGATACTCTAGGTTCTTTTGTGTATGTTCCATGTGAAGTGATGAAGCAACGCATGCAGATTCAAGGCACAATTGCATCTTGGAGTTCCGTTGTAGTGAATGATGGCATCGCAATCAAGCCTGGCACACAAATATATGGTTATTATACAGGGATGTTACATGCAGGCTGTTCAATATGGAAAGCACAGGGCTTAAAGGGTTTATATGCAGGATATTTGTCTACATTGGCAAGGGATGTTCCATTTGCTGGCCTAATGGTTGTGTTCTATGAAGCTTTGAAAGATGCTAAAGATTATGTAGAGCAAAGATGGATATCTAGCCCAAATTGGCATGTTAATAATTCAGTTGAGGGCCTGGTTTTAGGAGGATTAGCTGGTGGTCTCAGTGCATATCTCACCACTCCTTTGGATGTTGTTAAAACTAGACTGCAAGTGCAGGGTTCAACTTTGAGGTATAATGGCTGGTTAGATGCAATTCACAATATATGGGCTACAGAAGGCATGAAGGGGATGTTTAGAGGTAGCGTCCCCAGGATTACATGGTACATTCCAGCTTCAGCGCTTACATTCATGGCTGTGGAATTTCTCAGAGATCATTTTTATGAAAGAGTGCCCAATGATAATTTGGAAGATGTTGGTAGATTATCAGTAGACCATAAATCTGCAGGAGGTTTAAAAGTTTCTCATTAA 1083 0.4229 MAVQSSTSSESQASENVMHRHFFLWREFLWGAVAGAFGEGMMHPVDTVKTRLQSQAILNGIQNQKNILQMVRYVWQVDGLKGFYRGVTPGIIGSLATGATYFGVIESTKKWIEDSHPSLRGHWAHFIAGAVGDTLGSFVYVPCEVMKQRMQIQGTIASWSSVVVNDGIAIKPGTQIYGYYTGMLHAGCSIWKAQGLKGLYAGYLSTLARDVPFAGLMVVFYEALKDAKDYVEQRWISSPNWHVNNSVEGLVLGGLAGGLSAYLTTPLDVVKTRLQVQGSTLRYNGWLDAIHNIWATEGMKGMFRGSVPRITWYIPASALTFMAVEFLRDHFYERVPNDNLEDVGRLSVDHKSAGGLKVSH 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01571 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 244 330 IPR018108 -
Gma04g01571 360 Gene3D Mitochondrial carrier domain 171 347 IPR023395 -
Gma04g01571 360 PRINTS Mitochondrial carrier protein signature 27 40 IPR002067 GO:0055085
Gma04g01571 360 PRINTS Mitochondrial carrier protein signature 40 54 IPR002067 GO:0055085
Gma04g01571 360 PRINTS Mitochondrial carrier protein signature 200 218 IPR002067 GO:0055085
Gma04g01571 360 PRINTS Mitochondrial carrier protein signature 253 275 IPR002067 GO:0055085
Gma04g01571 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 22 111 IPR018108 -
Gma04g01571 360 SUPERFAMILY Mitochondrial carrier 23 327 IPR023395 -
Gma04g01571 360 ProSiteProfiles Solute carrier (Solcar) repeat profile. 120 227 IPR018108 -
Gma04g01571 360 PANTHER S-ADENOSYLMETHIONINE MITOCHONDRIAL CARRIER PROTEIN 1 353 - -
Gma04g01571 360 Gene3D Mitochondrial carrier domain 2 170 IPR023395 -
Gma04g01571 360 Pfam Mitochondrial carrier protein 247 333 IPR018108 -
Gma04g01571 360 Pfam Mitochondrial carrier protein 24 114 IPR018108 -
Gma04g01571 360 Pfam Mitochondrial carrier protein 122 226 IPR018108 -
Gma04g01571 360 PANTHER MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN 1 353 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01571 Gma-Chr4 42644307 42649250 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01571 29 328 EF-hand Containing Proteins AT2G35800 28.713 4.24e-32 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01571 - - gmx:100790921 719.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01571 04 42644307 42649250 Gma04g01571 04 42644307 42649250 ECH