Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01547 ATGCTCTTACAATCTGACATGCTGGGTTTAATGTTGTTTAGGTTTTTTGATATTTCAAAAACAAATGCAAAGAGAGCATACATGGTTATCCAGGACACACACAATGTTCGATCTGTATCTTTTCATCCTTCAGGAGACTTTCTGCTGGCAGGAACTGATCATGCAATTCCACATTTGTATGATATAAATACCTTTCAGTGTTATCTGTCGGCAAATATCCCAGACACTAGCCCCAGTGGAGCCATAAACCAGGCATATATTCTTGTAGGCTCCATGTATGTTACAGCATCTAAAGATGGTGCTATTCGGTTGTGGGATGGCATCACTGCCAATTGTGTGCGCTCAATAACTGCAGCACATGGAACAGCTGAGGCTACCAGTGCAATTTTTACAAAAGATCATAGGTTTATTCTCTCTTGCGGGAAGGATTCTACCATAAAGCTTTGGGAAGTTGGCTCTGGAAGATTAATCAAACAATATCTGGGAGCTATGCATACGCAGCTAAGGTGCCAGGCTATTTTTAATGAGACAGAAGAATTTATTCTATCCATAGATGAACTAAGCAATGAGATTGTTATCTGGGATGCAATAACAACAGAAAAAGTAGCAAAGTGGCCTTCTAATCATGTTGGTGCACCCCGCTGGCTTGAACACTCGCCAATAGAGTCTGCTTTTATTTCCTGTGGAACTGATAGGTCAGTTCGGTTCTGGAAGTAA 717 0.41 MLLQSDMLGLMLFRFFDISKTNAKRAYMVIQDTHNVRSVSFHPSGDFLLAGTDHAIPHLYDINTFQCYLSANIPDTSPSGAINQAYILVGSMYVTASKDGAIRLWDGITANCVRSITAAHGTAEATSAIFTKDHRFILSCGKDSTIKLWEVGSGRLIKQYLGAMHTQLRCQAIFNETEEFILSIDELSNEIVIWDAITTEKVAKWPSNHVGAPRWLEHSPIESAFISCGTDRSVRFWK 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01547 238 PRINTS G protein beta WD-40 repeat signature 93 107 IPR020472 -
Gma04g01547 238 PRINTS G protein beta WD-40 repeat signature 137 151 IPR020472 -
Gma04g01547 238 PRINTS G protein beta WD-40 repeat signature 225 238 IPR020472 -
Gma04g01547 238 PANTHER CLEAVAGE STIMULATION FACTOR SUBUNIT 1 14 238 IPR044633 GO:0005848|GO:0031124
Gma04g01547 238 ProSiteProfiles Trp-Asp (WD) repeats profile. 130 159 IPR001680 GO:0005515
Gma04g01547 238 SUPERFAMILY WD40 repeat-like 16 238 IPR036322 GO:0005515
Gma04g01547 238 ProSitePatterns Trp-Asp (WD) repeats signature. 137 151 IPR019775 -
Gma04g01547 238 SMART WD40_4 109 150 IPR001680 GO:0005515
Gma04g01547 238 SMART WD40_4 64 106 IPR001680 GO:0005515
Gma04g01547 238 SMART WD40_4 23 61 IPR001680 GO:0005515
Gma04g01547 238 SMART WD40_4 198 238 IPR001680 GO:0005515
Gma04g01547 238 ProSiteProfiles Trp-Asp (WD) repeats profile. 90 115 IPR001680 GO:0005515
Gma04g01547 238 Gene3D - 13 238 IPR015943 GO:0005515
Gma04g01547 238 Pfam WD domain, G-beta repeat 218 238 IPR001680 GO:0005515
Gma04g01547 238 Pfam WD domain, G-beta repeat 33 56 IPR001680 GO:0005515
Gma04g01547 238 Pfam WD domain, G-beta repeat 111 149 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01547 Gma-Chr4 41929943 41932403 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g01547 36 237 Miscellaneous Gene Families AT5G08390 21.182 2.11e-08 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01547 K14406 - gmx:100809908 438.728
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01547 04 41929943 41932403 Gma04g01547 04 41929943 41932403 ECH