Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g01516 ATGTCGAAGCTGCTGCTTCTACCCACTCCTCCCCTCACCACCTCCATTCACCGCTTCAACACTTCATCTTCGGCTTCTGCCCTTCAATTCCAATGCCGATTCTCCCTTTCTCTTCTCTCTCGTCTCCACCACTCTCCCACTTCCTTCCGCTCCCTCGTGCGTAGAACAAGAGACCTTCCCCTTCGCGCTTTCGATTCCTCCTCCGATGCCAATAGCGAAGAAAAAGAAGAAGTAAAGGAAAATGAAGAGGGCGTTGACAACCGGAGTGGAAGTAGGATTGCCGACGAGGATTATCCGAGCGGCCAGTTTGACTTCGAACCGGTTACCGGATGGAGAAGCTTCCTCGTCAAGCTCAAGATGCTAGTCGCGTTCCCTTGGGAGCGTGTCCAAAAGGGCAGCGTCCTCACAATGAAGCTTCGTGGCCAGATATCTGATCAAGTGAAGAGTAGGTTCTCTCCAGGACTTTCTCTGCCTCAAATTTGTGAGAATTTTTTGAAAGCAGCGTATGATCCTCGTATTTCTGGGATCTATCTTCATATTGATAGTTTAAATTGCGGGTGGGGTAAAGTAGAAGAAATTCGAAGGCATATATTGGATTTCAAAAAATCAGGAAAATTTGTTTTGGCTTATGTTCCTTTATGCCAAGAGAAAGAGTATTATCTTGCATCTGCATGTGAAGAGATATATGCCCCACCCAGTGCTTACTTTTCTTTGTTTGGATTGACTGTTCAAGCCTCATTCCTCAAAGGCGTTTTAGATAACATAGGAATTGAACCACAAGTGGAAAGGATTGGAAAATACAAAAGTGCAGGAGATCAACTAGCTCGAAGAACCATGTCTGAAGAAAATTGTGAGATGCTGACCACGTTACTTGATAATATCTATACAAATTGGCTGGATAAAGTCTCTTCTGCCAAAGGAAAAACAAGAGAAGATATTGAGAACTTCATAAATGAAGGTGTTTATCAAGTAGACAAGCTGAAAGAAGAGGGACTCATATCAAATATAAACTATGATGATGAGATTACTGCCATGTTGAAGGAGAGACTTGGAGTGAAATCAGATAAAGATCTGCGTATGGTGGATTACAGGAAATACTCTAGAGTTAGGAAATGGACTGTTGGAATACCAGGTGGTAAAGAACTTATAGCCATTATCCGAGCATCGGGGAGTATTAGTCGTGTAGAGAGTCAATTCAGTGTCTCTAGCTCAGGGATCATTGCAGAGAAGTTCATTGAGAAGATTCGCACTGTCAGAGAATCAAAAAAATTTAAGGCTGCTATCATCAGAATTGACAGTCCTGGAGGTGATGCTCTTGCTTCTGATTTGATGTGGAGAGAAATCCGGCTTTTGGCTGCTTCAAAACCAGTCATTGCTTCAATGTCTGATGTGGCAGCAAGTGGAGGGTACTACATGGCAATGGGAGCTGATGTTATTGTTGCAGAAAGTCTTACCTTAACTGGTTCAATTGGAGTGGTAACAGGAAAATTTAACCTGGGGAAACTGTACGAGAAGATCGGCTTTAACAAAGAAATTATATCAAGGGGAAGATATGCTGAGCTCCTTGCTGCTGAGCAACGTCCTTTCAGACCAGATGAAGCAGAGCTATTTGCCAAATCTGCTCAGCATGCTTATAAACAATTTCGAGACAAGGCAGCTTCATCCAGATCAATGACTGTAGAAAAGATGGAGGAGTTTGCACAGGGAAGGGTTTGGACTGGTAAGGATGCAGCTTTGCGTGGTTTAGTTGATGCTATTGGTGGCCTTTCTCGAGCTATTGCCATAGCAAAAATGAAGGCTGATATACCTCAAGACAGACAGGTTACACTTGTGGAGATCTCTAGAGCCAGCCCTTCTCTACCCGAGATTTTGTTAGGCGTAGGGAGTTCCCTCGTTGGAGCTGACAGAACGGCAAAGGAACTGCTTCAGGGCTTGACATTTTCTGATGGAGTTCAAGCCCGGATGGATGGAATAAAGTTTCAGACATTGGAAGAATATCCTTTTGGCAACCCTATTTTGTCAATAATAAAAGACATCCTCAGTTCCCTATAG 2052 0.4357 MSKLLLLPTPPLTTSIHRFNTSSSASALQFQCRFSLSLLSRLHHSPTSFRSLVRRTRDLPLRAFDSSSDANSEEKEEVKENEEGVDNRSGSRIADEDYPSGQFDFEPVTGWRSFLVKLKMLVAFPWERVQKGSVLTMKLRGQISDQVKSRFSPGLSLPQICENFLKAAYDPRISGIYLHIDSLNCGWGKVEEIRRHILDFKKSGKFVLAYVPLCQEKEYYLASACEEIYAPPSAYFSLFGLTVQASFLKGVLDNIGIEPQVERIGKYKSAGDQLARRTMSEENCEMLTTLLDNIYTNWLDKVSSAKGKTREDIENFINEGVYQVDKLKEEGLISNINYDDEITAMLKERLGVKSDKDLRMVDYRKYSRVRKWTVGIPGGKELIAIIRASGSISRVESQFSVSSSGIIAEKFIEKIRTVRESKKFKAAIIRIDSPGGDALASDLMWREIRLLAASKPVIASMSDVAASGGYYMAMGADVIVAESLTLTGSIGVVTGKFNLGKLYEKIGFNKEIISRGRYAELLAAEQRPFRPDEAELFAKSAQHAYKQFRDKAASSRSMTVEKMEEFAQGRVWTGKDAALRGLVDAIGGLSRAIAIAKMKADIPQDRQVTLVEISRASPSLPEILLGVGSSLVGADRTAKELLQGLTFSDGVQARMDGIKFQTLEEYPFGNPILSIIKDILSSL 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g01516 683 MobiDBLite consensus disorder prediction 64 95 - -
Gma04g01516 683 Gene3D - 527 652 - -
Gma04g01516 683 CDD S49_Sppa_N_C 383 597 IPR002142 GO:0006508|GO:0008233
Gma04g01516 683 MobiDBLite consensus disorder prediction 64 93 - -
Gma04g01516 683 SUPERFAMILY ClpP/crotonase 123 336 IPR029045 -
Gma04g01516 683 SUPERFAMILY ClpP/crotonase 379 588 IPR029045 -
Gma04g01516 683 TIGRFAM SppA_dom: signal peptide peptidase SppA, 36K type 383 597 IPR004635 GO:0006508|GO:0008233
Gma04g01516 683 PANTHER PROTEASE 4 38 682 - -
Gma04g01516 683 CDD S49_SppA_67K_type 135 348 - -
Gma04g01516 683 Gene3D - 275 368 - -
Gma04g01516 683 Gene3D - 132 274 - -
Gma04g01516 683 PIRSF Protease_4_SppA 67 682 IPR004634 GO:0006465|GO:0008233|GO:0016021
Gma04g01516 683 Gene3D - 379 526 - -
Gma04g01516 683 Pfam Peptidase family S49 200 352 IPR002142 GO:0006508|GO:0008233
Gma04g01516 683 Pfam Peptidase family S49 451 601 IPR002142 GO:0006508|GO:0008233
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g01516 Gma-Chr4 40689196 40710685 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g01516 K04773 - gmx:100781522 1249.57
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g01516 04 40689196 40710685 Gma04g01516 04 40689196 40710685 ECH