Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00879 ATGGAGGCCGACGAGAAGAAAGCAATGATCCGCGACGTAGCGCTACAAGTCGTTTTCATTTCCCTCACTATTTTCAGCTTCCTCTGGATGCACGGCCTCCCTCAAAACCTCTACGCCAAGCTCCGCCACCGTCCTCCAAACTCTCGCGCCGTCCAAGCCAAGCGCCACTTCGTCCAAGGCGCACAGCTCCTCGCCCAAGCCAGAAGATCCAAAAGCGCTTCCGCCGCAACCTCCCTCGCCAAACAGGCCCTAGCCGAGGCCGAGAAGGCCCTCGCGCTCGACCCCAAGGACGCCGCCTCGCACCTCCTCAAGTCCATGGCGCTCGACCTCCAGGGCTTCCGCACCAACGCGCTCGACGCGCTCGACGCCGCGTTGTCCCCTCTCGCCGCGGGGTCCCTCGCCGAGGAAGAGAGGGGCGACGCGCTGCTGAAGAGGGCGGAGCTCAAGATCGCGATGAGCGAGCGGCGCGTTGACTCGGTGCTGGCCGATTTGACCGAGTCGGTGAAGCTGAGTCCGCGAAACGCGAAGGCGTGGTGCATGCTGGGGGAGTGCTACGAAGGAAACAAAATGGGAGAAGAAGCGAAGAAGGCTTATAAAGAGGCTTTGGAGTTGGAGCCACAGTCGAATGTGGCTCAAGAAGCGCTCAGCAGGTTGGGATCATCGTAA 666 0.6156 MEADEKKAMIRDVALQVVFISLTIFSFLWMHGLPQNLYAKLRHRPPNSRAVQAKRHFVQGAQLLAQARRSKSASAATSLAKQALAEAEKALALDPKDAASHLLKSMALDLQGFRTNALDALDAALSPLAAGSLAEEERGDALLKRAELKIAMSERRVDSVLADLTESVKLSPRNAKAWCMLGECYEGNKMGEEAKKAYKEALELEPQSNVAQEALSRLGSS 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00879 221 PANTHER - 10 218 - -
Gma04g00879 221 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 5 10 218 - -
Gma04g00879 221 SUPERFAMILY TPR-like 81 215 IPR011990 GO:0005515
Gma04g00879 221 Pfam Tetratricopeptide repeat 175 207 IPR001440 GO:0005515
Gma04g00879 221 SMART tpr_5 175 208 IPR019734 GO:0005515
Gma04g00879 221 Gene3D Tetratricopeptide repeat domain 66 220 IPR011990 GO:0005515
Gma04g00879 221 Coils Coil 143 163 - -
Gma04g00879 221 ProSiteProfiles TPR repeat profile. 175 208 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00879 Gma-Chr4 8672480 8673145 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00879 - - gmx:100799725 365.54
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00879 04 8672480 8673145 Gma06g00868 06 7970736 7971846 GST
Gma14g01819 14 48625281 48626291 Gma04g00879 04 8672480 8673145 PCT