Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00856 ATGCGTTCATTGGTGCCGAAGGGAAGCAGCAGAAGCATGACATGTCTATGCCTTACCCATTCACTCACTCAAACCCATAGCCATAACCTACTGGCTACTACCTTCTCTTCTTCTCTCTATAATAGTAACAACCGTAACCCCCTCTTTCAATTATTCTCCGGTATTCTCCGGCCTCGAATTCGAGCATTTTCCACCGACTTCAGGAGCGCCCCCACACCAACTGCTTCTTCTTCTGCCTTTGCCCAAAGCATGGCGAATTTCGACGCTGATTCCGTCACTTACCTTAAGCAGCGAGATGCCGCGGAGATCGACGAGACACTCATGGGTCCACTTGGCTTCAGCGTTGACCAGCTCATGGAGTTGGCTGGTTTGAGTGTCGCCACTTCCATTTCTGAGGTTTACAAACCGAGTGAGTATAGTCGTGTTCTTACTATATGTGGTCCCGGTAACAATGGTGGTGACGGTCTCGTAGCTGCTCGGCACCTGCATCACTTCGGTTATAAGCCATTTGTCTGTTACCCAAAGCGTACCCCCAAGCCTCTATATGCTGGGTTAGTTACTCAGCTTGAAGCACTGTCAATCCCATTCTTCTCAGTGGAAGAACTACCATCAGATCTTTCAAATGGTTTTGACGTTGTCATAGATGCAATGTTTGGATTCTCATTTCATGGTTCTCCAAGGCCTCCTTTTGATGATTTGATCCAGAGACTTGTCTCTTTACATAATAATAATAATCAAATTGGCCAAAAAAGATCAGTTATAGTCTCTGTAGATATTCCCTCTGGGTGGCATGTTGAAGAGGGAGATGTTGATGGTACAGGCATTAAACCTGATATGTTGGTTTCTTTGACAGCCCCAAAATTAGGTGCAAAGAAGTTTGGTGGTCCTCACCACTTTCTAGGAGGTAGATTTGTCCCACCTGCTATTGCAGAAAAATATAAGCTTATACTTCCACCATATCCTGGAACTTCCATGTGTGTTCGAATTGGAAAGCCTCCACGTATTGATATCTCAGCTCTAAGAGAGAACTATATCTCTCCAGAATTTCTTGAAGAGCAGGTGGAGGCTGACCCTTTTAATCAGTTTCATAAATGGTTTAATGATGCATTGGCTGCTGGTTTGAAGGAACCAAATGCTATGTCCTTGTCAACTGTAGGGAAGGACGGAAAACCCTCATCAAGAATGGTATTGCTAAAAGGCTTGGATAAGGAAGGATTTGTGTGGTACACAAACTATGAAAGTCGAAAGGCACGTGAATTATCTGAAAATCCACGTGCATCACTTCTTTTTTACTGGGATGGTTTAAACCGGCAGGTACGGGTGGAAGGGCCTGTTCAGAAAGTCTCTGATGAGGAATCAGAACAGTATTTCCATAGCCGCCCTAGAGGTAGTCAGATTGGAGCAATAGTCAGCAAGCAGAGTACTGTAGTGCCGGGTAGGCATGTTCTTTATCAGGAGTACAAAGAGCTGGAAGAAAAATACTCTGATGGAAGTTTAATCCCTAAACCTAAGAACTGGGGTGGATATAGGCTAACACCACAACTTTTCGAGTTTTGGCAAGGGCAGAAATCTCGCTTGCATGACAGGTTGCAATATACTCCCCATGAGATCAATGGACAACGGCTGTGGAAGGTTGACCGGTTGGCTCCTTGA 1653 0.4495 MRSLVPKGSSRSMTCLCLTHSLTQTHSHNLLATTFSSSLYNSNNRNPLFQLFSGILRPRIRAFSTDFRSAPTPTASSSAFAQSMANFDADSVTYLKQRDAAEIDETLMGPLGFSVDQLMELAGLSVATSISEVYKPSEYSRVLTICGPGNNGGDGLVAARHLHHFGYKPFVCYPKRTPKPLYAGLVTQLEALSIPFFSVEELPSDLSNGFDVVIDAMFGFSFHGSPRPPFDDLIQRLVSLHNNNNQIGQKRSVIVSVDIPSGWHVEEGDVDGTGIKPDMLVSLTAPKLGAKKFGGPHHFLGGRFVPPAIAEKYKLILPPYPGTSMCVRIGKPPRIDISALRENYISPEFLEEQVEADPFNQFHKWFNDALAAGLKEPNAMSLSTVGKDGKPSSRMVLLKGLDKEGFVWYTNYESRKARELSENPRASLLFYWDGLNRQVRVEGPVQKVSDEESEQYFHSRPRGSQIGAIVSKQSTVVPGRHVLYQEYKELEEKYSDGSLIPKPKNWGGYRLTPQLFEFWQGQKSRLHDRLQYTPHEINGQRLWKVDRLAP 550
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00856 550 Gene3D - 344 542 IPR012349 -
Gma04g00856 550 SUPERFAMILY FMN-binding split barrel 351 550 - -
Gma04g00856 550 PANTHER NAD(P)H-HYDRATE EPIMERASE 88 535 - -
Gma04g00856 550 ProSitePatterns Pyridoxamine 5'-phosphate oxidase signature. 516 529 IPR019740 GO:0016638
Gma04g00856 550 ProSiteProfiles YjeF N-terminal domain profile. 100 317 IPR004443 -
Gma04g00856 550 Pfam Pyridoxamine 5'-phosphate oxidase 367 452 IPR011576 -
Gma04g00856 550 TIGRFAM yjeF_nterm: YjeF family N-terminal domain 98 292 IPR004443 -
Gma04g00856 550 PANTHER NAD(P)H-HYDRATE EPIMERASE 88 535 IPR032976 -
Gma04g00856 550 Gene3D - 91 333 IPR036652 -
Gma04g00856 550 Hamap Pyridoxine/pyridoxamine 5'-phosphate oxidase [pdxH]. 343 550 IPR000659 GO:0004733|GO:0008615|GO:0010181
Gma04g00856 550 Pfam Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region 506 550 IPR019576 -
Gma04g00856 550 SUPERFAMILY YjeF N-terminal domain-like 94 324 IPR036652 -
Gma04g00856 550 TIGRFAM pdxH: pyridoxamine 5'-phosphate oxidase 333 550 IPR000659 GO:0004733|GO:0008615|GO:0010181
Gma04g00856 550 Pfam YjeF-related protein N-terminus 116 289 IPR004443 -
Gma04g00856 550 Hamap NAD(P)H-hydrate epimerase [nnrE]. 96 332 IPR004443 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00856 Gma-Chr4 8434788 8442000 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00856 K23998 - gmx:100795497 1100.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00856 04 8434788 8442000 Gma04g00856 04 8434788 8442000 ECH
Gma04g00856 04 8434788 8442000 Gma06g00846 06 7800788 7802554 GST