Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00844 ATGGATGGACTATGTCGAAATGGGAGAGTCAAAGAAGCCTTTGAACTGTTTGAGGAAATGGTTTCAAGGGATCACATTGTGCCTGATCCTCTTACTTACAATGTTTTGATCAACGAGTTTTGCCGCAGAGGGAAACCTGACCGTGCTAGAAATGTGATCGAGTTTATGAAGAGTAACAGATGTTATCCAAATGTGTATAATTACTCAGCTCTGGTGGATGGTTTGTGTAAAGTTGGTAAGCTGGAAGATGCAAAAGGGGTTTTGGCTGAGATGAAGGGTTCTGGTTTGAAACCAGATACGGTTACTTACACTAGTTTGATCAATTTCTTGTGTAGGAATGGCCAGATTGGTGAAGCTATGGGGTTGCTTAAGGAAATAAAGGAGAATACATGCCAGGCTGATACTGTTACATTCAATGTGATACTTGGGGGTTTGTGTAGAGAAGATAGATTTGAGGAGGCTCTGGATATGCTTGAGAAACTCCCACAACAAGGTGTATATTTGAACAAAGGTAGTTACAGGATTGTTCTGAACTCCTTGACCCAAAAATGTGAGTTGAAAAAGGCAAAGGAGTTGTTGGGACTAATGCTAAGTAGGGGGTTTCGACCCCATTATGCTACCTCAAATGAATTGTTGGTTTGTCTGTGTAAGGCGGGGATGGTTGATGATGCTGCTGTGGCACTATTTTACTTGGTGGAGATGGGGTTCCAGCCAGGACTTGAGTCTTGGGAAGTTTTAATTGGATTAATCTGCAGAGAAAGGAAGTTGTTGTATGTTTTTGAGCTGCTTAATGAATTAGTGATCACAAATTCTTGA 816 0.413 MDGLCRNGRVKEAFELFEEMVSRDHIVPDPLTYNVLINEFCRRGKPDRARNVIEFMKSNRCYPNVYNYSALVDGLCKVGKLEDAKGVLAEMKGSGLKPDTVTYTSLINFLCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGLCREDRFEEALDMLEKLPQQGVYLNKGSYRIVLNSLTQKCELKKAKELLGLMLSRGFRPHYATSNELLVCLCKAGMVDDAAVALFYLVEMGFQPGLESWEVLIGLICRERKLLYVFELLNELVITNS 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00844 271 Pfam PPR repeat 172 201 IPR002885 -
Gma04g00844 271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 169 203 IPR002885 -
Gma04g00844 271 Pfam PPR repeat 2 21 IPR002885 -
Gma04g00844 271 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 1 269 - -
Gma04g00844 271 PANTHER FERTILITY RESTORER HOMOLOGUE A-LIKE 1 269 - -
Gma04g00844 271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 64 98 IPR002885 -
Gma04g00844 271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 134 168 IPR002885 -
Gma04g00844 271 Gene3D Tetratricopeptide repeat domain 185 270 IPR011990 GO:0005515
Gma04g00844 271 Gene3D Tetratricopeptide repeat domain 95 184 IPR011990 GO:0005515
Gma04g00844 271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 1 27 IPR002885 -
Gma04g00844 271 TIGRFAM PPR: pentatricopeptide repeat domain 101 134 IPR002885 -
Gma04g00844 271 TIGRFAM PPR: pentatricopeptide repeat domain 68 100 IPR002885 -
Gma04g00844 271 TIGRFAM PPR: pentatricopeptide repeat domain 172 203 IPR002885 -
Gma04g00844 271 TIGRFAM PPR: pentatricopeptide repeat domain 32 65 IPR002885 -
Gma04g00844 271 TIGRFAM PPR: pentatricopeptide repeat domain 136 169 IPR002885 -
Gma04g00844 271 TIGRFAM PPR: pentatricopeptide repeat domain 1 29 IPR002885 -
Gma04g00844 271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 29 63 IPR002885 -
Gma04g00844 271 Gene3D Tetratricopeptide repeat domain 1 94 IPR011990 GO:0005515
Gma04g00844 271 Pfam PPR repeat family 98 147 IPR002885 -
Gma04g00844 271 Pfam PPR repeat family 28 77 IPR002885 -
Gma04g00844 271 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 99 133 IPR002885 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00844 1 270 Miscellaneous Gene Families AT4G11690 27.037 8.32e-33 124
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00844 - - gmx:100790966 497.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00844 04 8272134 8272949 Gma04g00844 04 8272134 8272949 ECH
Gma04g00844 04 8272134 8272949 Gma06g00834 06 7679535 7684353 GST