Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00838 ATGACTCTGGCGCCTATATTAAAGGCCTCACGGCCTGCCATGCATGCACATGTTCATCCTTTGATTATATCACATATACTCACCATGGAGGCTAAGTTGGCCACCACCATAATACTTATTTTCTCCGTAATTTGGCTTATGAGGGTGAATGCCATAGACCCTTGTGCCTCTCAAGCGGATAATTCCGACCTGAACGTGATTCCCATCTACAGCAAATGTTCACCGTTCAAACCACCAAAGTCAGACTCATCGTGGGACAACAGAATTATAAACATGGCCTCCAAAGACCCACTCCGATTCAAATACTTGTCCACCTTAGTGGGCCAAAAGACCGTGTCCACGGCCCCAATCGCTTCGGGCCAGACCTTCAACATCGGCAACTACGTCGTCAGGGTCAAATTGGGAACCCCTGGTCAACTTTTGTTCATGGTCCTCGACACCAGCACCGACGAGGCCTTCGTTCCATGCTCGGGCTGCACGGGCTGCTCCGACACCACTTTCTCGCCCAAAGCCTCCACCAGCTATGGCCCATTGGACTGCTCTGTTCCCCAGTGCGGTCAGGTCCGCGGGCTTTCGTGCCCCGCCACAGGTACCGGCGCGTGCTCCTTCAACCAATCCTACGCGGGCTCATCTTTCTCCGCCACCCTAGTCCAAGACTCGTTAAGATTAGCCACTGATGTTATCCCCAACTACTCCTTCGGCTGCGTCAACGCCATCACCGGCGCCTCTGTCCCGGCCCAAGGGCTTTTGGGCCTGGGCCGTGGCCCGCTGTCCTTGCTCTCCCAATCCGGGTCAAATTACTCGGGCATCTTCTCTTACTGTCTCCCCAGCTTCAAGTCCTACTACTTCTCTGGGTCGCTCAAGCTCGGGCCCGTGGGCCAGCCCAAGAGCATTCGCACCACCCCGCTTCTTCGCAGCCCTCACCGTCCTTCTCTTTACTACGTGAACTTCACCGGAATCAGCGTGGGGCGTGTCCTGGTACCCTTTCCCAGCGAGTATCTTGGGTTTAACCCGAATACAGGATCCGGAACCATAATTGATTCGGGCACGGTGATAACCCGGTTCGTGGAGCCCGTTTACAACGCGGTGAGGGAGGAGTTCAGGAAGCAGGTGGGAGGCACTACATTCACGAGCATTGGAGCCTTCGATACGTGTTTTGTGAAAACCTACGAAACTCTGGCGCCGCCAATTACGCTGCACTTCGAGGGGTTGGACCTGAAACTGCCGTTGGAAAACAGCTTGATCCACAGCAGCGCGGGTTCGCTGGCGTGTCTTGCAATGGCGGCGGCACCCGACAATGTGAACTCGGTGTTGAACGTCATCGCCAACTTTCAGCAACAGAACCTTAGGATTTTGTTTGATACCGTCAATAATAAGGTTGGCATAGCCCGTGAGGTTTGTAACTAG 1407 0.5444 MTLAPILKASRPAMHAHVHPLIISHILTMEAKLATTIILIFSVIWLMRVNAIDPCASQADNSDLNVIPIYSKCSPFKPPKSDSSWDNRIINMASKDPLRFKYLSTLVGQKTVSTAPIASGQTFNIGNYVVRVKLGTPGQLLFMVLDTSTDEAFVPCSGCTGCSDTTFSPKASTSYGPLDCSVPQCGQVRGLSCPATGTGACSFNQSYAGSSFSATLVQDSLRLATDVIPNYSFGCVNAITGASVPAQGLLGLGRGPLSLLSQSGSNYSGIFSYCLPSFKSYYFSGSLKLGPVGQPKSIRTTPLLRSPHRPSLYYVNFTGISVGRVLVPFPSEYLGFNPNTGSGTIIDSGTVITRFVEPVYNAVREEFRKQVGGTTFTSIGAFDTCFVKTYETLAPPITLHFEGLDLKLPLENSLIHSSAGSLACLAMAAAPDNVNSVLNVIANFQQQNLRILFDTVNNKVGIAREVCN 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00838 468 Pfam Xylanase inhibitor C-terminal 313 463 IPR032799 -
Gma04g00838 468 Pfam Xylanase inhibitor N-terminal 128 290 IPR032861 -
Gma04g00838 468 Gene3D Acid Proteases 106 290 IPR021109 -
Gma04g00838 468 Gene3D Acid Proteases 291 468 IPR021109 -
Gma04g00838 468 ProSiteProfiles Peptidase family A1 domain profile. 128 463 IPR033121 -
Gma04g00838 468 PANTHER ASPARTYL PROTEASE AED3 34 468 - -
Gma04g00838 468 SUPERFAMILY Acid proteases 121 467 IPR021109 -
Gma04g00838 468 PANTHER ASPARTYL PROTEASE-RELATED 34 468 IPR001461 GO:0004190|GO:0006508
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00838 Gma-Chr4 8224470 8226410 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00838 119 468 Miscellaneous Gene Families AT1G77480 26.873 4.32e-15 75.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00838 - - gmx:100788630 861.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00838 04 8224470 8226410 Gma04g00838 04 8224470 8226410 ECH
Gma04g00838 04 8224470 8226410 Gma06g00829 06 7638847 7640338 GST