Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00820 ATGGCCGTTTCAACCACTTTCTCCGGTGCCAAATTGGAGGCTCTATTGCTCAAATGTTCTTCCTCCTCTTCCTCACCACCGCCTTCAAGGTCATCATTCACCACTTTTCCCGGCCAAAACAGAAGAACCCTCATTCAGAGAGGGGTTATTCGCTGCGACGCTCAGCCCTCTGATGCATCATCTGTTGCTCCAAATAATGCCACCGCTCTCTCCGCTCTTGAGCAGCTCAAGACTTCTGCAGCTGATAGATATACAAAGGAAAGAAGCAGCATTATCGCCATTGGGCTCAGTGTGCACACTGCACCTGTGGAAATGCGTGAAAAACTTGCCATTCCAGAAGCAGAATGGCCTAGAGCTATTGCAGAGCTGTGTAGTCTGAATCATATTGAAGAAGCAGCTGTTCTGAGTACCTGCAATCGAATGGAGATATATGTTCTTGCCCTGTCCCAACATCGTGGTGTCAAAGAAGTCATGGAATGGATGTCAAAAACAAGTTCTGTCCCTGTTTCAGAGCTTAGCCAGCACCGGTTTTTACTTTACAACAATGATGCCACACAGCATCTTTTTGAAGTATCAGCAGGTCTTGACTCTCTTGTTTTGGGGGAAGGTCAAATCCTTTCTCAGGTTAAGCAAGTTGTTAAAGTTGGACAAGGAGTTAACGGCTTTGGGAGAAATATCAGTGGGCTATTCAAGCATGCAATTACTGTCGGGAAAAGGGTTAGAACTGAGACTAATATTGCTTCTGGGGCAGTTTCTGTGAGCTCAGCTGCCGTTGAGTTGGCCTATATGAAGTTACCTGAAGCCTCACACGATAATGCCAGGATGTTGGTTATTGGTGCTGGCAAGATGGGAAAGCTTGTGATCAAACATTTGGTGGCAAAAGGTTGCAAAAAGATGGTGGTTGTCAATAGAACTGAGGAGAGAGTTGCTGCAATACGTGAAGAACTGAAGGATATTGAGATTATCTACAAACCCCTTTCAGAAATGCTCACCTGTGCTGGCGAAGCAGATTTAGTTTTCACCAGTACTGCATCAGAAAACCCATTATTCTTGAAAGAACATGTCAAGGACCTTCCTCCTGCAAGTCAAGAAGTTGGAGGCCGTCGCTTTTTCATTGATATCTCTGTTCCCCGGAATGTGGGTTCATGTGTCTCAGACCTTGAGTCTGTGCGAGTTTACAATGTTGACGACCTTAAAGAGGTTGTGGCTGCCAATAAAGAGGATCGCCTAAGAAAAGCAATGGAAGCACAGGCAATCATTGCTGAAGAATCTAAGCAATTCGAAGCTTGGAGGGACTCACTGGAAACTGTTCCTACTATTAAGAAATTGAGGGCTTATGCTGAAAGAATCAGGCTTGCTGAGCTTGAGAAGTGCTTAGGTAAGATGGGTGATGATATACCAAAGAAAACGCGGAGAGCTGTGGATGACCTTAGTCGGGGTATAGTGAATAAGTTGCTTCATGGTCCAATGCAACATTTAAGGTGTGATGGGAACGACAGCCGGACTCTTAGTGAGACACTGGAGAACATGAATGCTTTGAATAGGATGTTCAACCTTGAGACAGAAATATCTGTTTTGGAGGAGAAGATTCGAGCAAAGGTCGAACAAAACCAGAAATGA 1620 0.4494 MAVSTTFSGAKLEALLLKCSSSSSSPPPSRSSFTTFPGQNRRTLIQRGVIRCDAQPSDASSVAPNNATALSALEQLKTSAADRYTKERSSIIAIGLSVHTAPVEMREKLAIPEAEWPRAIAELCSLNHIEEAAVLSTCNRMEIYVLALSQHRGVKEVMEWMSKTSSVPVSELSQHRFLLYNNDATQHLFEVSAGLDSLVLGEGQILSQVKQVVKVGQGVNGFGRNISGLFKHAITVGKRVRTETNIASGAVSVSSAAVELAYMKLPEASHDNARMLVIGAGKMGKLVIKHLVAKGCKKMVVVNRTEERVAAIREELKDIEIIYKPLSEMLTCAGEADLVFTSTASENPLFLKEHVKDLPPASQEVGGRRFFIDISVPRNVGSCVSDLESVRVYNVDDLKEVVAANKEDRLRKAMEAQAIIAEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEKCLGKMGDDIPKKTRRAVDDLSRGIVNKLLHGPMQHLRCDGNDSRTLSETLENMNALNRMFNLETEISVLEEKIRAKVEQNQK 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00820 539 TIGRFAM hemA: glutamyl-tRNA reductase 91 501 IPR000343 GO:0008883|GO:0033014|GO:0050661
Gma04g00820 539 Gene3D - 89 249 IPR036343 GO:0008883|GO:0033014|GO:0050661
Gma04g00820 539 PANTHER GLUTAMYL-TRNA REDUCTASE 1, CHLOROPLASTIC 1 539 - -
Gma04g00820 539 Pfam Shikimate / quinate 5-dehydrogenase 260 401 IPR006151 -
Gma04g00820 539 SUPERFAMILY Glutamyl tRNA-reductase catalytic, N-terminal domain 90 246 IPR036343 GO:0008883|GO:0033014|GO:0050661
Gma04g00820 539 PANTHER GLUTAMYL-TRNA REDUCTASE 1 539 - -
Gma04g00820 539 Coils Coil 302 322 - -
Gma04g00820 539 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 249 409 IPR036291 -
Gma04g00820 539 SUPERFAMILY Glutamyl tRNA-reductase dimerization domain 413 519 IPR036453 GO:0008883|GO:0033014|GO:0050661
Gma04g00820 539 Gene3D - 250 402 - -
Gma04g00820 539 Coils Coil 509 536 - -
Gma04g00820 539 ProSitePatterns Glutamyl-tRNA reductase signature. 187 210 IPR018214 GO:0008883
Gma04g00820 539 CDD NAD_bind_Glutamyl_tRNA_reduct 91 413 - -
Gma04g00820 539 Pfam Glutamyl-tRNAGlu reductase, dimerisation domain 415 519 IPR015896 GO:0008883|GO:0033014|GO:0050661
Gma04g00820 539 Hamap Glutamyl-tRNA reductase [hemA]. 90 517 IPR000343 GO:0008883|GO:0033014|GO:0050661
Gma04g00820 539 Pfam Glutamyl-tRNAGlu reductase, N-terminal domain 94 244 IPR015895 GO:0008883|GO:0033014|GO:0050661
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00820 Gma-Chr4 7958027 7960941 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00820 K02492 - gmx:100782247 1006.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00820 04 7958027 7960941 Gma04g00820 04 7958027 7960941 ECH
Gma04g00820 04 7958027 7960941 Gma06g00811 06 7433137 7435809 GST