Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00789 ATGGCGGTTTCCGACAGTCCCAGCGGCGGCTCCACGCCACCTCAACAGGAACAACAACCCAACAAGTACGCTTTCACCAAGCCCCTCTCTCTCGCGGGTCCCACCGACGCCGATCTCCAGCGTAACAACGAATTGGACAAGTTCTTGCTCGATTCGGGGCTCTACGAGAGCAATGAAGAATCCGCGGCGAGGAAAGAGGTTCTTCACCGCCTTGATCAGATTGTGAAAAACTGGGTGAAGCAGTTGACGCGCCAACGTGGCTACACAGATCAGATGGTTGAGGATGCAAATGCTGTCATTTTTACTTTTGGCTCTTACCGACTAGGGGTTCATGGACCTGGAGTTGACATAGACACTTTGTGCATTGGTCCTTCTTATGTGAACCGAGAGGAAGATTTTTTTGTCATTTTGCATAACATCCTGGCCGAAATGGAAGAGGTTTCTGAACTTCAACCAGTTCCTGATGCACATGTTCCAGTAATGAAATTCAAATTCCAGGGAATATCTATAGATTTGCTGTATGCAAGTATATCACTTTTGGTTGTGCCAGAAGACCTAGATATTTCGCATGGTTCAGTGCTGTATGATGTTGATGAACCAACTGTTCGAAGTCTTAATGGCTGCCGTGTGGCAGATCAAATTCTTAAACTTGTTCCAAATGTTGAGCACTTCCGAACTGCATTGAGATGTTTAAAGTTTTGGGCTAAAAGGCGTGGTGTTTATTCAAATGTTACTGGATTCCTTGGTGGTGTAAATTGGGCTATTTTAGTTGCTCGAATTTGCCAGCTCTACCCTAATGCAATCCCCAGTATGTTGGTTTCTCGATTCTTCAGGGTCTATACACAGTGGCGGTGGCCAAACCCTGTAATGCTATGCTCTATAGAAGAGAATGAACTGGGATTCCCTATATGGGATCCTCGTAGAAACCCCCGAGACAGATTTCACACTATGCCAATAATTACTCCCGCATACCCTTGCATGAATTCAAGCTACAATGTTTCGGCAAGCACTCTTCGTGTTATGATGGAACAGTTCCGCTATGGCAATAAGATTTGTGATGAAATTGAGCTTAATAAGGCCCAGTGGAGCGCACTTTTTCAGCCTTATATTTTTTTTGAGGCATACAAAAACTATTTACAAGTGGACATAATTGCATCAGACGCGGATGATTTACTAGCATGGAGGGGCTGGGTAGAATCTCGGTTGAGACTGCTTACCCTGAAGATAGAACGAGATACAAATGGGATGCTGCAGTGCCATCCTTACCCAAATGAGTATGTAGACACATCCAAGCTGTGTGCACATTCTGCATTTTTCATGGGCTTGCAAAGAAAAGAGGGAGTAAGAGGTCAAGAGGGGCAGCAATTTGATATACGTGGAACAGTTGATGAATTCAGACAAGAAATAAATATGTACATGTACTGGAAGCCAGGGATGGATATTTTTGTTTCTCATGTTCGTCGAAAGCAACTCCCTGCATTTGTTTTTCCTGGTGGTTACAAACGCACTCGAATGCCAAGGCATATTAGCCATCAAGCTGAAAAAACAGGTGATGATGCCACTAAGTGCTACTCTGGGTCTGGGTCTGGGTCGTCTGAAAGATGCATCAAGAGGAAAAGTTGCCCTGAAATGGTGGATAAGAAGCCAGGCAAACCAGATAAGCGGGCATCTATTAGCCCACAAAGGTTAGAATGTGTTTCTCCTGAAAGTTGTACTAGTAAATCAGGTGGTACAACTCAAATGAGTATTGAGTGTATCGAAGTGGTTAGGTTAGCTGGTTCAACAACCAAGGATGCTAACGACAATTGTGAAGTTAAGTCATCTGATGCACTCCCAGGAAGTGGACTAAGCACTGAGGTAGCTGACATGCAGATTAGTGAACCGGGCTTTGTTGACACCACACATGATATGTTGAAATCAAGGAGTGTTGAAATTCCAAATGAGAATGGAGTTCTCAATGGGGACAAAGCTCAGGATCTAGCTTTAGATTGCTTGGAAAGTGCAGAAACTGAATCTACTAACAGCTTGTCAAACTATAAAGAGGGAGACAATGATACGGATCAGCGACTAGACAAAGAATGTAATTTCATCCCAAGGGCTGAATGTTCAGATTATGTACCAAATGCCAGTTCCCAGAACCTCAATTGCGAGCCAGATGTCAGACTCGGTAGTGCTGTATAA 2181 0.4411 MAVSDSPSGGSTPPQQEQQPNKYAFTKPLSLAGPTDADLQRNNELDKFLLDSGLYESNEESAARKEVLHRLDQIVKNWVKQLTRQRGYTDQMVEDANAVIFTFGSYRLGVHGPGVDIDTLCIGPSYVNREEDFFVILHNILAEMEEVSELQPVPDAHVPVMKFKFQGISIDLLYASISLLVVPEDLDISHGSVLYDVDEPTVRSLNGCRVADQILKLVPNVEHFRTALRCLKFWAKRRGVYSNVTGFLGGVNWAILVARICQLYPNAIPSMLVSRFFRVYTQWRWPNPVMLCSIEENELGFPIWDPRRNPRDRFHTMPIITPAYPCMNSSYNVSASTLRVMMEQFRYGNKICDEIELNKAQWSALFQPYIFFEAYKNYLQVDIIASDADDLLAWRGWVESRLRLLTLKIERDTNGMLQCHPYPNEYVDTSKLCAHSAFFMGLQRKEGVRGQEGQQFDIRGTVDEFRQEINMYMYWKPGMDIFVSHVRRKQLPAFVFPGGYKRTRMPRHISHQAEKTGDDATKCYSGSGSGSSERCIKRKSCPEMVDKKPGKPDKRASISPQRLECVSPESCTSKSGGTTQMSIECIEVVRLAGSTTKDANDNCEVKSSDALPGSGLSTEVADMQISEPGFVDTTHDMLKSRSVEIPNENGVLNGDKAQDLALDCLESAETESTNSLSNYKEGDNDTDQRLDKECNFIPRAECSDYVPNASSQNLNCEPDVRLGSAV 726
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00789 726 Pfam Poly(A) polymerase central domain 26 367 IPR007012 GO:0004652|GO:0043631
Gma04g00789 726 PANTHER NUCLEAR POLY(A) POLYMERASE 4 12 622 - -
Gma04g00789 726 CDD NT_PAP_TUTase 63 218 - -
Gma04g00789 726 Pfam Poly(A) polymerase predicted RNA binding domain 371 430 IPR007010 GO:0003723|GO:0043631
Gma04g00789 726 Pfam Poly(A) polymerase predicted RNA binding domain 434 503 IPR007010 GO:0003723|GO:0043631
Gma04g00789 726 Gene3D - 26 366 - -
Gma04g00789 726 PANTHER POLY A POLYMERASE 12 622 - -
Gma04g00789 726 Gene3D Beta Polymerase, domain 2 56 212 IPR043519 -
Gma04g00789 726 SUPERFAMILY PAP/Archaeal CCA-adding enzyme, C-terminal domain 371 496 IPR011068 GO:0003723|GO:0016779|GO:0031123
Gma04g00789 726 SUPERFAMILY Nucleotidyltransferase 20 217 IPR043519 -
Gma04g00789 726 MobiDBLite consensus disorder prediction 1 22 - -
Gma04g00789 726 MobiDBLite consensus disorder prediction 513 535 - -
Gma04g00789 726 SUPERFAMILY PAP/OAS1 substrate-binding domain 219 368 - -
Gma04g00789 726 Pfam Nucleotidyltransferase domain 97 173 IPR002934 GO:0016779
Gma04g00789 726 Gene3D Poly(A) polymerase predicted RNA binding domain 371 486 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00789 Gma-Chr4 7504816 7511271 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00789 K14376 - gmx:100819294 1464.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00789 04 7504816 7511271 Gma06g00785 06 7110838 7117019 GST