Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00786 ATGAGCGTTTCACATTTCGCGGTTCTATCGTCGTGTTGTCGTCCACGCTTCGCCCCTTCTTTGTCGCGTGCTTCAGCCCTCCGTTCTCGCATCCGGTGTTGTACTACTCTCACTTCTACTTCTTCAGAGACTCCCACTCCAACCTCCGTCAAGAAACGAGTAGTGTCGGGAGTTCAGCCCACGGGCTCAATTCACCTCGGAAACTATTTTGGCGCCATCAAGAATTGGGTTGCCCTTCAGAATGTGTATGATACACTTTTCTTCATTGTGGACCTGCACGCGATCACATTACCATATGACACCCAACAGTTATCTAAGGCTACAAGGTCAACTGCTGCTATTTACCTAGCATGTGGAGTGGATCCTTCAAAGGCTTCAGTATTTGTGCAGTCTCATGTTCGGGCACATGTAGAATTGATGTGGCTGCTAAGTTCCACAACACCAATTGGTTGGCTGAACAAAATGATACAGTTTAAAGAGAAATCTCGCAAGGCGGGAGATGAAGAAGTTGGGGTTGCCCTTTTGACTTATCCTGTTCTGATGGCTTCTGATATACTTCTATATCAGTCTGATTTTGTCCCGGTTGGTGAAGATCAAAAGCAGCATTTGGAGTTGACCCGTGACTTGGCTGAACGGGTTAATAATTTATATGGAGGAAGAAAGTGGAAGAAATTAGGCGGCCGAGGCGGTACCATATTTAAGGTTCCAGAGCCCCTTATACCTCCAGCCGGAGCCCGGATAATGTCCTTAACTGATGGCCTGTCCAAGATGTCAAAGTCTGCACCTTCTGATCAATCCAGAATCAATATTCTTGATCCTAAAGATCTTATAGCAAACAAGATCAAACGTTGCAAAACTGATTCATTTCCAGGTTTGGAATTTGACAACTCTGAGAGGCCTGAATGTAACAATCTTCTTTCCATATACCAGCTTATTTCAGGAAAGACAAAAGAGGAAGTTGTGCAGGAATGCCAAAACATGAATTGGGGCGCTTTCAAACCTCTTTTAACAGATGCCTTGATTGATCATTTGCATCCCATTCAGGTTCGCTACGAGGAAATCATGTCCGATTCAGGTTATTTAGATGGAGTTTTGGCACAAGGTGCTAGAAATGCAGCAGATATAGCAGATTCTACACTTAATAATGTTTACCAAGCAATGGGATTTTTGAAGAGACTGATAATTGATGCCAAATAA 1197 0.4386 MSVSHFAVLSSCCRPRFAPSLSRASALRSRIRCCTTLTSTSSETPTPTSVKKRVVSGVQPTGSIHLGNYFGAIKNWVALQNVYDTLFFIVDLHAITLPYDTQQLSKATRSTAAIYLACGVDPSKASVFVQSHVRAHVELMWLLSSTTPIGWLNKMIQFKEKSRKAGDEEVGVALLTYPVLMASDILLYQSDFVPVGEDQKQHLELTRDLAERVNNLYGGRKWKKLGGRGGTIFKVPEPLIPPAGARIMSLTDGLSKMSKSAPSDQSRINILDPKDLIANKIKRCKTDSFPGLEFDNSERPECNNLLSIYQLISGKTKEEVVQECQNMNWGAFKPLLTDALIDHLHPIQVRYEEIMSDSGYLDGVLAQGARNAADIADSTLNNVYQAMGFLKRLIIDAK 398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00786 398 Gene3D HUPs 54 388 IPR014729 -
Gma04g00786 398 PANTHER BNAA04G15180D PROTEIN 27 389 - -
Gma04g00786 398 TIGRFAM trpS: tryptophan--tRNA ligase 51 389 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gma04g00786 398 PANTHER TRYPTOPHAN--TRNA LIGASE, MITOCHONDRIAL 27 389 - -
Gma04g00786 398 Pfam tRNA synthetases class I (W and Y) 52 344 IPR002305 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma04g00786 398 PRINTS Tryptophanyl-tRNA synthetase signature 64 80 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gma04g00786 398 PRINTS Tryptophanyl-tRNA synthetase signature 114 133 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gma04g00786 398 PRINTS Tryptophanyl-tRNA synthetase signature 191 212 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gma04g00786 398 PRINTS Tryptophanyl-tRNA synthetase signature 256 266 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gma04g00786 398 ProSitePatterns Aminoacyl-transfer RNA synthetases class-I signature. 60 69 IPR001412 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Gma04g00786 398 CDD TrpRS_core 53 341 IPR002306 GO:0000166|GO:0004830|GO:0005524|GO:0006436
Gma04g00786 398 Gene3D - 249 359 - -
Gma04g00786 398 Hamap Tryptophan--tRNA ligase [trpS]. 51 390 IPR024109 GO:0004830
Gma04g00786 398 SUPERFAMILY Nucleotidylyl transferase 52 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00786 Gma-Chr4 7453735 7460472 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00786 K01867 - gmx:100780447 733.406
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00786 04 7453735 7460472 Gma04g00786 04 7453735 7460472 ECH
Gma04g00786 04 7453735 7460472 Gma06g00779 06 7059979 7067629 GST