LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gma04g00769	ATGGATGGTCAACTTGGTATAAATGGAGAGGAATCACATGACAATGAATATGCTGTTGGAGACAATTCTCTAGTGCCCCGCATACTGAACAAGTTTCTTGAATTGCATCCCCCTGATTCTTCTTCATCGGGTGTGTCTGAAGCAGAAAGTAAAACACCACTTAAGATATGTGCTGTCAAAGCTGGAGGAATGATGTCTCTAGCTATTGATAACCATGGGACCCTGTGGATGTGGGGAAACTGCCCACGACAAAGCAAAGAAGGTGGGTTAGCACTTGTAAGCAGTTTCACTCCAACTCCAGTTTGGGATTTTCAGGGCCACACTGTTGTCAAGGTTGCATGTGGAAATGAGCATGTTGTAGCTCTGGTTAGTGCTGGAGAGACATACAATGGTGAAGATCTAGTGTGCTACTCTTGGGGTTATAACAGCCGTGGCCAATTAGGCTTGGGGGATCGAGAGAGCAGACTGCATCCGGAAGTTGTTAGAACATTTGACGAGGAGTCCCCTTATGAGGTAGCATGTGGTGCCTTTCACACTGCTTTGCTCACTCGTAAAAAGAAACCTAGTGACACAGTAGAAAGCACATGCTGGACCTTTGGCCTTGGGGATAATGGCCAGCTTGGGCATGGAACTACACAAAGCACATTATTTCCTACACCTGTTAAAGAATTGCCACAAAATGTATCACTTATCTGTGTTGACTGTGGTTTGTTTCATACTAGTGTTGTTTCCTCAGATGGGGATGTGTGGTCATGGGGAATGGAGAAGGGCCTTGGCTTATGCCCTGATGCTAGTCGTGCTGGAACAGATTCGGGCGATGCCCTCTCTCCCCGTCTCATGTCATGCCAGCCCCATCAACTTAAATTTCCAGATCCAGTTAAAGTTGCATGTGGGGCCGCACATACTGTTATTGTTGCACGAAAGGGATATAGAATGTGGTCTTGGGGTAGGGGAAGGAGTGGAGTTCTTGGAGATGGTAAAGGGTTTGATTGTTACACTCCTACAGCTGTGCTATGGCCTTCTACAATGGAGGATTCTGAGGAAGAGGAAGTAAAAAGCTCCGGTGAGCAAGATAAGGCTAGAGAAAAGGAGACTGAATTGACAACAGAAACAGAAGAGAAATTATCGTCAGCATTGAATGAGCTGAAGCTGCTTCAAACAAAGCTATCTATAATGGAAAAATATGCTAGTATACTTCATGGTTCTATTTTTGGAAAACCTTTTGATGAACAAGATATCCCTGTTTCATTGCGGAATTCAGGTTCATTTGACATTGCAAAAGAATGGGAGAGTATGTTGGAGGCAGCAGATCAAAGGAAGCTGATTAGGTTGGAAATGTTTTACCGTGACATGCTTACTGGAGTGAAAGATGAACTAATGAAGAGAAGGATCAAGGAAATTGTACAAGAGTGTCTCCAATCTTCAGAGGTGAAAAAATAG	1440	0.4417	MDGQLGINGEESHDNEYAVGDNSLVPRILNKFLELHPPDSSSSGVSEAESKTPLKICAVKAGGMMSLAIDNHGTLWMWGNCPRQSKEGGLALVSSFTPTPVWDFQGHTVVKVACGNEHVVALVSAGETYNGEDLVCYSWGYNSRGQLGLGDRESRLHPEVVRTFDEESPYEVACGAFHTALLTRKKKPSDTVESTCWTFGLGDNGQLGHGTTQSTLFPTPVKELPQNVSLICVDCGLFHTSVVSSDGDVWSWGMEKGLGLCPDASRAGTDSGDALSPRLMSCQPHQLKFPDPVKVACGAAHTVIVARKGYRMWSWGRGRSGVLGDGKGFDCYTPTAVLWPSTMEDSEEEEVKSSGEQDKAREKETELTTETEEKLSSALNELKLLQTKLSIMEKYASILHGSIFGKPFDEQDIPVSLRNSGSFDIAKEWESMLEAADQRKLIRLEMFYRDMLTGVKDELMKRRIKEIVQECLQSSEVKK	479

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gma04g00769	479	ProSiteProfiles	Regulator of chromosome condensation (RCC1) repeat profile.	134	185	IPR000408	-
	Gma04g00769	479	MobiDBLite	consensus disorder prediction	342	370	-	-
	Gma04g00769	479	Pfam	Regulator of chromosome condensation (RCC1) repeat	246	304	IPR000408	-
	Gma04g00769	479	Pfam	Regulator of chromosome condensation (RCC1) repeat	137	182	IPR000408	-
	Gma04g00769	479	Pfam	Regulator of chromosome condensation (RCC1) repeat	196	242	IPR000408	-
	Gma04g00769	479	ProSiteProfiles	Regulator of chromosome condensation (RCC1) repeat profile.	73	125	IPR000408	-
	Gma04g00769	479	SUPERFAMILY	RCC1/BLIP-II	48	339	IPR009091	-
	Gma04g00769	479	MobiDBLite	consensus disorder prediction	345	370	-	-
	Gma04g00769	479	PANTHER	E3 UBIQUITIN-PROTEIN LIGASE HERC2-LIKE PROTEIN	7	479	-	-
	Gma04g00769	479	ProSitePatterns	Regulator of chromosome condensation (RCC1) signature 2.	172	182	IPR000408	-
	Gma04g00769	479	PRINTS	Chromosome condensation regulator RCC1 signature	135	151	IPR000408	-
	Gma04g00769	479	PRINTS	Chromosome condensation regulator RCC1 signature	312	326	IPR000408	-
	Gma04g00769	479	PRINTS	Chromosome condensation regulator RCC1 signature	196	212	IPR000408	-
	Gma04g00769	479	ProSiteProfiles	Regulator of chromosome condensation (RCC1) repeat profile.	247	308	IPR000408	-
	Gma04g00769	479	ProSiteProfiles	Regulator of chromosome condensation (RCC1) repeat profile.	194	246	IPR000408	-
	Gma04g00769	479	PANTHER	REGULATOR OF CHROMOSOME CONDENSATION	7	479	-	-
	Gma04g00769	479	Gene3D	-	1	373	IPR009091	-
	Gma04g00769	479	Coils	Coil	368	388	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gma04g00769	Gma-Chr4	7260744	7262737	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gma04g00769	-		-	gmx:100815199	947.962

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Gma04g00769	04	7260744	7262737	Gma04g00769	04	7260744	7262737	ECH
	Gma04g00769	04	7260744	7262737	Gma06g00761	06	6901480	6902148	GST