Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00742 ATGGTGAATCCCTTGGTGGAACGTGCCACGAGCAGCATGCTCGTGGGCCCTGATTGGGCCTTGAACATGGAGATCTGTGACATACTCAATCGTGACCTTGGGCAAGCAAAGGATGTTGTTAAAGGTATAAAGAAGCGGATTGGAAGTAAAGTTCCTAGAGTTCAAATTCTTGCACTGACGCTGCTGGAGACAATCATAAAGAATTGTGGGGACATTGTCCACATGCATGTTGCCGAGAGAGATGTTCTTCATGAGATGGTGAAAATAGTAAAGAAGAAGCCTGATTATCATGTCAGAGAGAAGATATTGATTCTTATAGATACTTGGCAAGAAGCTTTTGGAGGGTCAAGGGCAAGATATCCACAGTATTATGCAGCATACCAGGAGCTTTTGCATGCTGGCACAGCATTCCCTCAGAGGTATGAGCAATCTACACCTGTATTTACACCGCTACAAACACAGCCATTGTCATCATACCCTCAAAATATACGAGACACTGTTGCTCGGCAAGACACAGCTGAGTCCTCAGTGGAGTCTGAGTTTCCAGCCCTAAGTTTGTCCGAAATTCAGAATGCACGTGGTATTATGGATGTTCTTGCAGAAATGCTCAATGCATTAGACCCTGGTAACAAAGAAGGGCTTCAGCAGGAAGTTATTGTTGATTTAGTGGAGCAATGTCGAACATACAAGCAGAGAGTGGTGCACCTTGTTAATTCAACTTCGGATGAGTCACTGCTTTGCCAAGGCCTAGCTCTGAATGATGATCTGCAGCGTGTCCTGGCCAAGCATGAATCCATTGCTTCAGGAACTTCTGCTCAAAATCATACTGAGAAACCGAAGCCTGTTCCTACTGGAGCACTTGTAGATGTTGATGGTCCTTTGGTTGATATTGGAGACACAAGTAAACAAACAGATGTGAGGTTATCGTCTTCTAGTGCTGAAGCTGGGTCGCAAACATTAAATCAGCTAATGCTTCCTGCCCCCCCAACATCAAATGGATCAGCCCCCCCTGCAAAGGTTGATCCCAAAGTGGACCTACTCAGTGGTGACGACTATAACTCACCAAAAGCAGAGACTTCACTTGCTCTTGTTCCTCTTGGAGAACAGCAGCCAGCCAGCCCTATGTCTCAACAGAATGCCCTTGTTCTTTTTGATATGTTTTCTAATGGAAGCAATGCACCTATTTCTGTTAATACCCAGCCAATTAATATTGTTGGCCAAACCAGTCCGTTAGCTCCTCAATTTCAACAACAGACTTTCATATCTCAAGGGGTGTTTTACCCCAACGGAAGTGTGCCAAATGTGGGGTCACCTCGGTATGAGCAATCACCTTTTGTGCAGAGCACAGGTCCTTCCTGGAATGGCCAGGTTGCGCAACAGCAACAGCCTCTTTCACCAGTTTATGGTACAGCAAGTGGTGGATCATTTCCGCCACCACCCTGGGAAGCACAATCTACAGACAATGATAGTCCAGTAGCAGGCAGTCAATACCCACAACCACTGCAAGTCACTCAAATGGTTATGACGCGTTTACAAAGCGGTGCACATCCTCAGGGACCTCAAGCAATGGGGCATGACCAAGCTGTTGGAATGTATATGCAGCCAAATGCTGTCCATATGTCAACCATCAATAACCATGTTCAAAGCAATCAATTAGGCTTGTACCCGCAAAATATTCAGGGTGTTGCTGGTTCCTATATGGATATGGTTTCACATCAAATGCATAATAGTCCTGTGGCTTCCATGTATCCTCAACAGATGTATGGCAACCAATTCGGAGGATATGGCTATGGTCAGCAACCAAGGGTTCAGTATGTTGAGCAGCAAATGTATGGTTTATCTGTCAGAGATGATGGTGCTCTGAGAAATTCTAACCAGGTTTCTTCTACATCCTATGTGCCACCGGGGAAGCCTTCCAAGCCAGAAGATGAGTTATTTGGGGACCTTGTTAACATGGCAAAAGTGAAACCAAAATTTACTCCTGATCCAACTGCGGGGGGAAAAAAACGCGGGTGCCAACTGTGCTATAGAGACTATCATCTTCTTGGTGGGTCCACTGTTCTAGGGTTTGCACAGTTCCATTTTACTTTTCATTTCCGATCCATAATTGTCCCAACGCGATACACCAATTCTTCCTTCCTTTCATCTCGTGAAATCCAAAGAGTTGCGACACGGTTGCGCATATCCAGCATGCAGGCATCGCGGGCAAGGCTGTTCAAGGAGTACAAAGAGGTGCAGCGGGAAAAGGCTGTTGATCTTGATATTCAACTAGTTTGTGATGATTCAAACATTTTTAAATGGACCGCTCTTATCAAGGGACCCTCTGAGACTCCTTATGAGGGTGGTGTGTTCCAGCTTGCGTTTTCTGTTCCGGAGCAGTATCCTCTACAGCCACCTCAAGTCCGGTTTTTGACTAAAATATTTCACCCAAATGTGCATTTTAAGACTGGGGAGATTTGCCTAGATATCTTGAAAAATGCTTGGAGCCCCGCTTGGACACTTCAATCTGTCTGTAGGGCTATAATTGCGTTGATGGCCCATCCAGAACCTGACAGCCCACTGAATTGTGATTCAGGTTGCAATCTTCTGCGTTCAGGGGATGTTAGAGGGTACCAATCCATGGCAAGAATGTACACGAGACTCGCGGCTATGCCAAAGAAAGGCTGA 2667 0.4567 MVNPLVERATSSMLVGPDWALNMEICDILNRDLGQAKDVVKGIKKRIGSKVPRVQILALTLLETIIKNCGDIVHMHVAERDVLHEMVKIVKKKPDYHVREKILILIDTWQEAFGGSRARYPQYYAAYQELLHAGTAFPQRYEQSTPVFTPLQTQPLSSYPQNIRDTVARQDTAESSVESEFPALSLSEIQNARGIMDVLAEMLNALDPGNKEGLQQEVIVDLVEQCRTYKQRVVHLVNSTSDESLLCQGLALNDDLQRVLAKHESIASGTSAQNHTEKPKPVPTGALVDVDGPLVDIGDTSKQTDVRLSSSSAEAGSQTLNQLMLPAPPTSNGSAPPAKVDPKVDLLSGDDYNSPKAETSLALVPLGEQQPASPMSQQNALVLFDMFSNGSNAPISVNTQPINIVGQTSPLAPQFQQQTFISQGVFYPNGSVPNVGSPRYEQSPFVQSTGPSWNGQVAQQQQPLSPVYGTASGGSFPPPPWEAQSTDNDSPVAGSQYPQPLQVTQMVMTRLQSGAHPQGPQAMGHDQAVGMYMQPNAVHMSTINNHVQSNQLGLYPQNIQGVAGSYMDMVSHQMHNSPVASMYPQQMYGNQFGGYGYGQQPRVQYVEQQMYGLSVRDDGALRNSNQVSSTSYVPPGKPSKPEDELFGDLVNMAKVKPKFTPDPTAGGKKRGCQLCYRDYHLLGGSTVLGFAQFHFTFHFRSIIVPTRYTNSSFLSSREIQRVATRLRISSMQASRARLFKEYKEVQREKAVDLDIQLVCDDSNIFKWTALIKGPSETPYEGGVFQLAFSVPEQYPLQPPQVRFLTKIFHPNVHFKTGEICLDILKNAWSPAWTLQSVCRAIIALMAHPEPDSPLNCDSGCNLLRSGDVRGYQSMARMYTRLAAMPKKG 888
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00742 888 SMART ubc_7 736 884 - -
Gma04g00742 888 ProSitePatterns Ubiquitin-conjugating (UBC) active site signature. 808 824 IPR023313 -
Gma04g00742 888 ProSiteProfiles VHS domain profile. 9 138 IPR002014 GO:0035091|GO:0043130
Gma04g00742 888 Pfam GAT domain 194 268 IPR004152 GO:0035091|GO:0043130
Gma04g00742 888 CDD UBCc 737 879 IPR000608 -
Gma04g00742 888 PANTHER TOM1-LIKE PROTEIN 1 661 IPR044836 GO:0035091|GO:0043130|GO:0043328
Gma04g00742 888 Pfam VHS domain 4 130 IPR002014 GO:0035091|GO:0043130
Gma04g00742 888 ProSiteProfiles GAT domain profile. 180 268 IPR004152 GO:0035091|GO:0043130
Gma04g00742 888 Gene3D - 179 275 IPR038425 -
Gma04g00742 888 MobiDBLite consensus disorder prediction 436 497 - -
Gma04g00742 888 SUPERFAMILY UBC-like 731 884 IPR016135 -
Gma04g00742 888 CDD GAT_GGA_like_plant 188 266 - -
Gma04g00742 888 SUPERFAMILY ENTH/VHS domain 3 138 IPR008942 -
Gma04g00742 888 Coils Coil 728 748 - -
Gma04g00742 888 Pfam Ubiquitin-conjugating enzyme 737 877 IPR000608 -
Gma04g00742 888 Gene3D Ubiquitin Conjugating Enzyme 693 887 IPR016135 -
Gma04g00742 888 CDD VHS 2 130 - -
Gma04g00742 888 Gene3D - 1 148 IPR008942 -
Gma04g00742 888 PANTHER TARGET OF MYB PROTEIN 1 1 661 - -
Gma04g00742 888 SMART VHS_2 2 134 IPR002014 GO:0035091|GO:0043130
Gma04g00742 888 MobiDBLite consensus disorder prediction 479 497 - -
Gma04g00742 888 MobiDBLite consensus disorder prediction 436 469 - -
Gma04g00742 888 MobiDBLite consensus disorder prediction 267 317 - -
Gma04g00742 888 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 733 884 IPR000608 -
Gma04g00742 888 MobiDBLite consensus disorder prediction 302 317 - -
Gma04g00742 888 SUPERFAMILY GAT-like domain 139 269 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00742 Gma-Chr4 6916985 6929532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00742 737 853 Miscellaneous Gene Families AT3G17000 35.537 1.98e-14 73.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00742 - - gmx:100805762 1305.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00742 04 6916985 6929532 Gma04g00742 04 6916985 6929532 ECH