Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00678 ATGGCCATTCTCCACTGCACGTCACTGCCATTTCTTTCTCTGAGAACCACCATCAGTTCCTCCAAGTCCACGTTAACCTCAACGAGAATTCCGTTGTTCCTAGCGATGAACTCGTTCGCCAAATCAGAACCCGTGTCATCCTCAGCCTCTTCATCATCATCAACGTACCAGCAGGTGCCGGAGCAAGATGCTAATAACGACTTGGACCGCGTAGCAGACAACACGTTTCGCAGGTACACGTCCAACGTTACCAAGGGGAGTGGCAAAGGAACAGCCATTGTCTGGTTCAGGAACGATCTCAGAGTTTTGGATAACGAGGCTCTCTATAAGGCATGGCTTTCCTCCGAAACCGTGTTACCTGTCTATTGTGTTGATCCTCGACTCTTTGCCACTACTTATCATTTCGGCTTTCCGAAAACCGGTGCATTGAGAGCGCAATTTCTCCTTGAATGCTTGGCTGACTTGAGGAAGAATTTGATGAAAAGAGGACTAAATTTGCTTGTACAACATGGGAAGCCTGAGGAAATCCTTCCTTCTCTTGCAAAATCTTTTCAAGCTCATACAGTGTATGCACAGAAAGAAACTTGCAGTGAGGAGCTGAATGTTGAAAGGTTAGTCATGAGAGGTCTTAAACAAGTTGTGACATCACCTGAGGAGTCCAGTGGTATCACAGTTTCAAACAACATCCCTAAGCTGCAACTAGTTTGGGGCACCACCATGTACCACCTTGATGACCTTCCTTTTGATGCTACTAGTTTGCCAGATGTGTATACTCAATTTCTGCTGCTTATGCTTGCTAATGGGATTCAAAACTTGCAGCTTGTTGAAACCAAATGTACTATACGCTCATGCATCAAACTACCAGCATCTCTTGGACCACCTCCCACAGTTCAGGATTGGGGATGCCTTCCTTCATTAGAGCAGCTGGGACTTAGCTCACAGAGTGTTAACAAAGGGATGAAGTTTGTGGGGGGTGAAACTGCAGCATTGAGCAGAGTATATGAATACTTTTGGAAGAAGGACTTGCTGAGGGTATATAAAGAGACCAGGAATGGGATGTTGGGGCCTGATTATTCTACCAAATTCTCACCATGGCTTGCCTCAGGAAGTTTGTCTCCTCGTTTCATATATGAAGAGGTGAAGAGATATGAGAATGATAGACTAGCAAATAGTTCTACCTACTGGGTTTTGTTCGAGTTGATATGGAGGGATTACTTTAGGTTTTTGTCAGTGAAATATGGGAATTCGCTTTTCCATTTAGGTGGTCCTAGGAAAGTTCAGCGCAACTGGAGCCAAGACAAGAATTTGTTTGAATCCTGGAGAGATGGTTGTACTGGGTATCCTCTGATAGATGCCAATATGAAAGAATTATCAACTACAGGATTTATGTCAAATCGAGGACGGCAGATTGTGTGTTCATTTCTTGTTCGTGATATGGGCATTGATTGGCGCATGGGAGCAGAATGGTTTGAGACATGTCTTTTGGATTATGATCCATGTTCTAATTATGGAAACTGGACTTATGGATCAGGAGTTGGGAATGATCCCAGAGAAGATCGTTATTTCAGCATCCCAAAACAAGCACAAACGTATGACCCTGAAGGTGAGTATGTTGCATACTGGTTGCCGCAGTTGCGAAAAATCCCAAAGGAGAAAAGAAACTTTCCTGGAAATTTAATATACATTCCTCAAATTGTGCCTCTCAAGTTTGGAACAACTAGTGGACACAATAAGGACAAGTTCTTTGGTGCAAGAAGAACCAACGATAGAGGAAATTGCAACCTTCCTTCGTACTCCGTGTTTACGTCGTTCGTGTGTGGAAAGTGGGAAAAGATAACACCCCAATTTCGAAGCCCCATTGCTCTTTCCTTCTCCCCTAATCCAATTGCCTCACACACACACTTGCAAGATCTAATTGTTCCAGAGAATCAGGGGATGGCGGATGATGACAAAGCGGTAGGGGAAGGTGAGAAGAAAGAGACGACGGGTGGTACCAGTCCTTCCGGGAGTGGAAAGAAGAAGAGCAAAGGTTTCTTGTTGCGAATTTGGAACGGGATATTTAGGTTTCACGGCGATGATTTTGAGAAGAGACTCCAATACATTTCTAAAGAGGAAGCTCAAGTTATGACTAGAATGAACAGGAGATCCCGATCCTGGAGGAGAATTTCCCGCCATCTTATTGTATTTTCTGTCATATTTGAGGTAGTTGCTATAGTTTATGCTATTATGACAACAAGATCAATCGATATGAATTGGAAAATGAGGGCAATCCGGGTTCTGCCAATGTTTCTTTTGCCTGCACTAGCAGCTGCTGCCTATACAACATTTGTCAGCTTCACAAGGATGTGTGATTGCAGGGATCAGAAAATTCTTGAAAGGCTTCGAGCTGAAAGGCAAGAAAAAATTGATGAGCTCAAAGAAAGGACAAATTATTACACTACACAACAGCTCATTCAGAGATATGATCCAGACCCGGCCGCAAAAGCAGCTGCTGCAAGTGTTTTAGCATCTAAGTTGGGTGCAGATTCTGGTTTGAAAGTGTATCTGGGAGATGAATCCAGTCCCGGTGCTTCAATGGGGAGGAGCAATGAAATTGAAATTGTGCAGTCCTCTGGACTTCGAAATCGGAGACAAGTTCAATCTAGATCCACTAGTCCAGGGACAACCACACCAAATTTTGCTGATCAACAATTAGTTGGTCCAGGAGGAATCGATCAAACTCAGACTTTTGAGCTCAATCAGCCTGTTGTTGTTGAACATCACCAACCTCGAAGTTCAACCACACAAGACGGAGGATGGATTGCACGAATTGCAGCTTTACTTGTGGGTGAGGATCCAACACAGTCGTATGCTCTCATATGTGGTAACTGCTATATGCATAATGGTCTGGCTCGGAAGGAGGATTTCCCAGTTATCACATACTATTGCCCGCATTGTCATGCCCTGAACAAACCGAAGCAATCAGATGAGCATATCTCTGGTCTTACTTCTCCAAACACGGGGGGGACTCCAAAAACAGACGATGGTGTGGCGGATGCAGTTAAGAATGCTAGGGCTTCTGCAGCCGAGAGTGTAATCACAAGCAGTAGTCCCGGAAGTGCTTCTAGCTCTGAGATTGAGGAAGTATCAGAAAGGGCAAGTGTGGAGGAGAAAGTTGATTAA 3162 0.4428 MAILHCTSLPFLSLRTTISSSKSTLTSTRIPLFLAMNSFAKSEPVSSSASSSSSTYQQVPEQDANNDLDRVADNTFRRYTSNVTKGSGKGTAIVWFRNDLRVLDNEALYKAWLSSETVLPVYCVDPRLFATTYHFGFPKTGALRAQFLLECLADLRKNLMKRGLNLLVQHGKPEEILPSLAKSFQAHTVYAQKETCSEELNVERLVMRGLKQVVTSPEESSGITVSNNIPKLQLVWGTTMYHLDDLPFDATSLPDVYTQFLLLMLANGIQNLQLVETKCTIRSCIKLPASLGPPPTVQDWGCLPSLEQLGLSSQSVNKGMKFVGGETAALSRVYEYFWKKDLLRVYKETRNGMLGPDYSTKFSPWLASGSLSPRFIYEEVKRYENDRLANSSTYWVLFELIWRDYFRFLSVKYGNSLFHLGGPRKVQRNWSQDKNLFESWRDGCTGYPLIDANMKELSTTGFMSNRGRQIVCSFLVRDMGIDWRMGAEWFETCLLDYDPCSNYGNWTYGSGVGNDPREDRYFSIPKQAQTYDPEGEYVAYWLPQLRKIPKEKRNFPGNLIYIPQIVPLKFGTTSGHNKDKFFGARRTNDRGNCNLPSYSVFTSFVCGKWEKITPQFRSPIALSFSPNPIASHTHLQDLIVPENQGMADDDKAVGEGEKKETTGGTSPSGSGKKKSKGFLLRIWNGIFRFHGDDFEKRLQYISKEEAQVMTRMNRRSRSWRRISRHLIVFSVIFEVVAIVYAIMTTRSIDMNWKMRAIRVLPMFLLPALAAAAYTTFVSFTRMCDCRDQKILERLRAERQEKIDELKERTNYYTTQQLIQRYDPDPAAKAAAASVLASKLGADSGLKVYLGDESSPGASMGRSNEIEIVQSSGLRNRRQVQSRSTSPGTTTPNFADQQLVGPGGIDQTQTFELNQPVVVEHHQPRSSTTQDGGWIARIAALLVGEDPTQSYALICGNCYMHNGLARKEDFPVITYYCPHCHALNKPKQSDEHISGLTSPNTGGTPKTDDGVADAVKNARASAAESVITSSSPGSASSSEIEEVSERASVEEKVD 1053
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00678 1053 Pfam DNA photolyase 92 261 IPR006050 -
Gma04g00678 1053 MobiDBLite consensus disorder prediction 871 894 - -
Gma04g00678 1053 Pfam FAD binding domain of DNA photolyase 398 552 IPR005101 -
Gma04g00678 1053 Coils Coil 788 808 - -
Gma04g00678 1053 MobiDBLite consensus disorder prediction 1021 1041 - -
Gma04g00678 1053 PANTHER CRYPTOCHROME DASH 77 575 - -
Gma04g00678 1053 Pfam Predicted integral membrane zinc-ribbon metal-binding protein 933 983 IPR019273 -
Gma04g00678 1053 SUPERFAMILY Cryptochrome/photolyase FAD-binding domain 320 554 IPR036134 -
Gma04g00678 1053 PRINTS DNA photolyase signature 445 461 IPR002081 -
Gma04g00678 1053 PRINTS DNA photolyase signature 504 518 IPR002081 -
Gma04g00678 1053 PRINTS DNA photolyase signature 465 483 IPR002081 -
Gma04g00678 1053 Gene3D - 238 418 - -
Gma04g00678 1053 MobiDBLite consensus disorder prediction 989 1004 - -
Gma04g00678 1053 PANTHER CRYPTOCHROME 77 575 IPR002081 -
Gma04g00678 1053 MobiDBLite consensus disorder prediction 646 675 - -
Gma04g00678 1053 MobiDBLite consensus disorder prediction 986 1053 - -
Gma04g00678 1053 ProSiteProfiles Photolyase/cryptochrome alpha/beta domain profile. 90 225 IPR006050 -
Gma04g00678 1053 Gene3D DNA Cyclobutane Dipyrimidine Photolyase, subunit A, domain 3 419 574 - -
Gma04g00678 1053 SUPERFAMILY Cryptochrome/photolyase, N-terminal domain 89 270 IPR036155 -
Gma04g00678 1053 TIGRFAM crypto_DASH: cryptochrome, DASH family 91 544 IPR014133 GO:0003913|GO:0006281
Gma04g00678 1053 Gene3D HUPs 54 237 IPR014729 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00678 Gma-Chr4 6291946 6301869 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00678 K25656 - gmx:100783312 1144.03