Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00607 ATGGCTTCCAACAAACTCCTGGCCACCATTTTGGTGCTTTCTCTCCTCTCTTACTCAACATTCACTCATGCCAATTGCCCAccacccactccatctccaaagcccacaccaccaactccaataccaacaccacccacaccaaagcccacaccacccactccaaagcccacaccaccaactcctaagcccacaccacccacaccaaatcccacaccacctactccaaagccTAGTTGTCCTCCTCCTTCTCCTCCTTCACCACCATCAAACAAAGCCTCATGCCCCAAGGACACATTAAAGCTAGGTGCTTGTGCTGATCTCTTAGGACTTGTTAACATTATTGTTGGAACTCCTCCTTCGAGCCAGTGTTGTGCATTGATCAAGGGTTTGGCGGATTTGGAAGCTGCACTTTGCCTATGCACCGCAATTAAGAGCAATGTGCTTGGAATCAACTTGAACGTACCTGTGACGCTCAGCGTGATCCTTAGTGCTTGTCAAAAGACTGTCCCTCCTGGTTTCCAATGTCCCTCCTGA 534 0.3427 MASNKLLATILVLSLLSYSTFTHANCPPPTPSPKPTPPTPIPTPPTPKPTPPTPKPTPPTPKPTPPTPNPTPPTPKPSCPPPSPPSPPSNKASCPKDTLKLGACADLLGLVNIIVGTPPSSQCCALIKGLADLEAALCLCTAIKSNVLGINLNVPVTLSVILSACQKTVPPGFQCPS 177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00607 177 Pfam Hydrophobic seed protein 94 176 IPR027923 -
Gma04g00607 177 MobiDBLite consensus disorder prediction 23 94 - -
Gma04g00607 177 PRINTS Proline rich extensin signature 26 38 - -
Gma04g00607 177 PRINTS Proline rich extensin signature 40 61 - -
Gma04g00607 177 PRINTS Proline rich extensin signature 66 82 - -
Gma04g00607 177 SMART aai_6 94 175 IPR016140 -
Gma04g00607 177 MobiDBLite consensus disorder prediction 26 91 - -
Gma04g00607 177 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 97 176 IPR036312 -
Gma04g00607 177 CDD HPS_like 92 175 IPR027923 -
Gma04g00607 177 Gene3D - 92 177 IPR036312 -
Gma04g00607 177 PANTHER - 63 176 - -
Gma04g00607 177 PANTHER - 1 30 - -
Gma04g00607 177 PANTHER LIPID TRANSFER PROTEIN 63 176 - -
Gma04g00607 177 PANTHER LIPID TRANSFER PROTEIN 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00607 Gma-Chr4 5540925 5541877 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00607 83 176 Acyl Lipid Metabolism Gene Families AT4G22490 40.625 1.71e-19 77.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00607 - - gmx:100526941 189.504
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00607 04 5540925 5541877 Gma04g00607 04 5540925 5541877 ECH
Gma17g02021 17 36254520 36255361 Gma04g00607 04 5540925 5541877 PCT
Gma14g01085 14 14259348 14260288 Gma04g00607 04 5540925 5541877 PCT
Gma04g00607 04 5540925 5541877 Gma17g02021 17 36254520 36255361 PCT
Gma04g00607 04 5540925 5541877 Gma14g01085 14 14259348 14260288 PCT