Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00575 ATGGTGATACGCATGTCGAAGGCTTACGATGCAGGTGAACTGATCTTGGTCTCGAAGCACATCAGAACCCTAGATTCCCTCCTCCGCTTCCACGCGCTGACGGTTACAAGCGGCCACTCCACGAACCTTTTCATGGCCTCAAAGCTGATATCTCTATACGATTCTCTGAACAACGATCCCAGTTCATGTTCCACACTCTTCCACTCTCTTCCCTCCAAAGACACATTCCTCTACAACTCCTTCCTCAAATCCCTCTTCTCCCGCTCCCTCTTCCCTCGCGTCCTCTCCCTCTTCTCCCACATGCGCGCCTCCAACCTCTCCCCCAACCACTTCACCCTACCCATCGTCGTCTCCGCCGCCGCGCACCTCACGCTCCTCCCCCACGGCGCATCACTCCACGCCCTCGCTTCCAAAACCGGCCTCTTCCATTCTTCCGCTTCCTTCGTTTCACTCTACTCGCGCTGTGGCCGAATGGAACTTGCACGCAAGGTGTTCGATGAAATTCCCAAAAGGGACGTGGTTGCTTGGACTGCACTCATCATCGGGCACGTGCACAACGGGGAGCCTGAGAAGGGTTTGAGGTGTCTCCGTCACGTGCATGGGGTTGTTGAAGATGATGAGAAGCCCAATGCTAAAACGTGGGAGGGTGGGTTTCTCGCGTGTGGGAACCTCGGTGCTGTGAGCGAAGGCTCGTGTTTGCATGGGGTGGTTGTCAAAAATGGGGTTGCTTCTTTTATACAGTCTTCGGTTTTGGATATGTATTCCAAATGCGGGGTTCCCCGAGAAGCGTATCGGTCCTTTTGTGAGGTGATTCACAAAGATCTTCTGTGCTGGACGTCCGTCATCGGGGTTTATGCGAGGATTGGGATGATGGGGGAGTGTCTGAGGTTGTTTAGGGAAATGCAGGAAAATGAAATACGCCCAGATGGGGTTGTTGTTGGTTGTGTGCTTTCGGGCTTTGGTAATTCCATGGATGTGTTTCAAGGGAAAGCGTTTCATGGAGTCATTATAAGGAGATATTATGTGGATGATGAGAAAGTTAATGATTCGCTGTTGTTTATGTACTGCAAGTTTGGAATGTTAAGTTTGGCAGAGAGGATTTTTCCGTTGTGCCAAGGGAGTGGAGATGGCTGGAATTTTATGGTTTTTGGGTATGGTAAAGTAGGGGAGAATGTGAAATGTGTTGAGCTCTTCAGGGAGATGCAGTGGTTAGGTATTCATTCCGAAACAATTGGCATAGCTTCGGCAATTGCCTCATGTGCCCAGTTAGGAGCAGTTAATTTGGGTAGGTCGATTCATTGCAATGTGATAAAGGGTTTTTTGGATGGTAAAAACATTTCAGTCACCAACTCACTCGTAGAGATGTATGGAAAATGTGGTAAGATGACCTTTGCTTGGAGGATATTTAATACATCGGAGACAGATGTTGTATCATGGAACACTTTGATTTCATCTCATGTTCACATCAAGCAGCATGAAGAGGCTGTAAATTTATTTAGTAAAATGGTTAGGGAAGACCAGAAGCCCAATACAGCCACACTTGTGGTAGTGCTTTCAGCTTGTTCTCACCTTGCATCTCTAGAGAAAGGAGAAAGGGTTCACTGCTACATAAATGAAAGTGGTTTTACACTCAATTTACCTCTCGGCACAGCATTGATTGATATGTATGCTAAGTGTGGGCAACTGCAAAAATCAAGAATGGTATTTGACTCTATGATGGAGAAGGATGTGATTTGCTGGAATGCGATGATTTCAGGCTATGGAATGAATGGATATGCAGAATCTGCTTTGGAGATATTCCAACATATGGAGGAATCAAATGTTATGCCCAATGGAATTACCTTCCTCTCTCTTCTCTCAGCATGTGCCCATGCAGGGCTTGTTGAAGAAGGCAAATACATGTTTGCCAGAATGAAGAGTTATTCTGTGAATCCCAATTTAAAGCACTACACTTGTATGGTAGATCTTTTGGGAAGGTATGGTAATGTACAAGAAGCAGAAGCCATGGTCCTATCCATGCCCATTTCTCCGGATGGTGGTGTTTGGGGAGCTTTGTTAGGTCATTGTAAAACTCACAATCAAATTGAGATGGGAATAAGAATTGCGAAGTATGCTATTGACTTGGAACCAGAAAACGACGGCTACTATATAATCATGGCCAATATGTATAGCTTCATTGGGAGGTGGGAAGAAGCAGAAAATGTGAGAAGGACGATGAAAGAGAGGTGTTCAATGGGAAAGAAAGCTGGTTGGAGTCTGCTCTGA 2265 0.4631 MVIRMSKAYDAGELILVSKHIRTLDSLLRFHALTVTSGHSTNLFMASKLISLYDSLNNDPSSCSTLFHSLPSKDTFLYNSFLKSLFSRSLFPRVLSLFSHMRASNLSPNHFTLPIVVSAAAHLTLLPHGASLHALASKTGLFHSSASFVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVHGVVEDDEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVKNGVASFIQSSVLDMYSKCGVPREAYRSFCEVIHKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLSGFGNSMDVFQGKAFHGVIIRRYYVDDEKVNDSLLFMYCKFGMLSLAERIFPLCQGSGDGWNFMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNVIKGFLDGKNISVTNSLVEMYGKCGKMTFAWRIFNTSETDVVSWNTLISSHVHIKQHEEAVNLFSKMVREDQKPNTATLVVVLSACSHLASLEKGERVHCYINESGFTLNLPLGTALIDMYAKCGQLQKSRMVFDSMMEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNGITFLSLLSACAHAGLVEEGKYMFARMKSYSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLSMPISPDGGVWGALLGHCKTHNQIEMGIRIAKYAIDLEPENDGYYIIMANMYSFIGRWEEAENVRRTMKERCSMGKKAGWSLL 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00575 754 Gene3D Tetratricopeptide repeat domain 332 444 IPR011990 GO:0005515
Gma04g00575 754 Gene3D Tetratricopeptide repeat domain 445 545 IPR011990 GO:0005515
Gma04g00575 754 Pfam E motif 692 750 IPR046848 -
Gma04g00575 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 274 308 IPR002885 -
Gma04g00575 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 576 610 IPR002885 -
Gma04g00575 754 SUPERFAMILY TPR-like 478 734 IPR011990 GO:0005515
Gma04g00575 754 Gene3D Tetratricopeptide repeat domain 550 752 IPR011990 GO:0005515
Gma04g00575 754 Pfam PPR repeat family 475 522 IPR002885 -
Gma04g00575 754 Pfam PPR repeat family 575 623 IPR002885 -
Gma04g00575 754 TIGRFAM PPR: pentatricopeptide repeat domain 613 646 IPR002885 -
Gma04g00575 754 TIGRFAM PPR: pentatricopeptide repeat domain 578 611 IPR002885 -
Gma04g00575 754 TIGRFAM PPR: pentatricopeptide repeat domain 550 577 IPR002885 -
Gma04g00575 754 TIGRFAM PPR: pentatricopeptide repeat domain 277 309 IPR002885 -
Gma04g00575 754 TIGRFAM PPR: pentatricopeptide repeat domain 477 511 IPR002885 -
Gma04g00575 754 PANTHER - 378 753 - -
Gma04g00575 754 PANTHER - 315 471 - -
Gma04g00575 754 PANTHER - 22 230 - -
Gma04g00575 754 PANTHER - 145 321 - -
Gma04g00575 754 Pfam PPR repeat 277 305 IPR002885 -
Gma04g00575 754 Pfam PPR repeat 649 673 IPR002885 -
Gma04g00575 754 Pfam PPR repeat 148 172 IPR002885 -
Gma04g00575 754 Pfam PPR repeat 378 406 IPR002885 -
Gma04g00575 754 Pfam PPR repeat 174 197 IPR002885 -
Gma04g00575 754 Gene3D Tetratricopeptide repeat domain 235 331 IPR011990 GO:0005515
Gma04g00575 754 Gene3D Tetratricopeptide repeat domain 141 230 IPR011990 GO:0005515
Gma04g00575 754 Gene3D Tetratricopeptide repeat domain 15 127 IPR011990 GO:0005515
Gma04g00575 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 611 645 IPR002885 -
Gma04g00575 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 475 509 IPR002885 -
Gma04g00575 754 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 74 108 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00575 Gma-Chr4 5194315 5196579 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00575 147 752 Glycoside Hydrolase AT3G49170 31.723 1.05e-88 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00575 - - gmx:100780090 1524.61