Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00541 ATGCTTCTCTCGGGAGGAGTGTCCGATCTCAAATGGATCCTCCAATTCGTATTCTACGCGTTCGTCTTGGCGATTGGACTGCACGCGCTTCTCAAGAACACCGCCTCCAAGTACTTCGACCTTGACGCCACTTTCCACGCTCACGCTATTCCTGGCCTTCTCATGGACCATTCTCTCTGCGCCGTTTGTCGCAACCCCGCCAACAAGAAGTGTTCGCGATGCAAATCCGTTCGATACTGTTCACAAGCATGCCAGCAGATGCACTGGAAATCCGAGCATAAGGTGAGATGCAAGGAGTTTCAGGGCAGCAGCACCAGTGTGATGATGAATTTGGCTCAAACTGAAGTCACTAATCGAGTTTTCAAGGCTTCTTCTGCTGCTGTGAATAGGAGTACATGTACTTCTTCAATTGCCCTCATTCCTGAATGCGGTCGTGGAACATCCAGGACTATCAAGCAGCCTAAAAGTGTTCTCTTTCCTTATGACGAATTTGTCAAATTGTTTAACTGGGACAAACCAGGATTTCCTCCTTGTGGACTCTTAAATTGTGGAAACAGCTGCTTTGCGAATGTGGTTCTCCAATGTCTCTCATTCACAAGGCCACTTATTGCCTTTCTATTGGAGAAGGGTCACCACAGAGAATGCTGCCATAATGATTGGTGCTTTCTGTGCGAATTTGAAACCCATGTTGAAAAAGTAAGGCTAAGTTCTCAGGCGTTTTCTCCGATGAATATTCTCTCTCGTTTGCCCAATATCAGTGGCACACTGGGTTATGGAAGACAAGAGGATGCTCATGAGTTCATGAGGTTTTCCATTGATGCTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGTTGTCCCCCCTAGGAATCAGGAAACAACCCTTATCCAACACATTTTTGGTGGCCACCTTCAATCTGAGGTGATTTGCACCGAATGTGAGAAGAATTCAAATCAATATGAAAATATGATGGACTTGACTGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTAGACCAATTTACTGCCAAGGAGTGGCTTCATGGGGATAATATGTATAAATGTGATGGGTGCAAGGGTTATGTCAAGGCATGGAAACGTCTCACAGTGAAACAAGCTCCAAATATTCTCACAATTGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGAAAGCTTAACAAGAGAGTAACTTTCCCTGAGACTTTAGATCTTAGTCCTTACATGAGTGAAGTTGGAGATGGATCTGATATTTATAAGCTATATGCTGTCGTAGTACATATTGATATGCTGAATGCTTCATTTTTTGGTCATTACATCTGCTACATCAAAGATTTCTGTGGAAACTGGTATAGAATTGATGATTGGAAGGTCTCGAGTGTGGAATTAGAAGAGGTTCTTTCTCAGGGTGCATACATGCTGTTGTATAGCAGGGTTAATGCTCGACCATCAGGACTTCAAAGTATTGAATCGTCAGAGACAGCAGAAGTTCAAACAATCAAATCGGAGGTGCCTCCTGGCCCGACTGAACAAGCTGAATGCCTCTCAGATATGAAAACTGAGACTTACAGTGGAGGATGCGAGGCTTTTCCATTTGACAGTAGTCTAGAGTTGAAGGTTTCTTGCTGTGAAAATGTGTCTTTGACCGAAATGAACTCTGAAGTTAAAAGAGAGCAGTTCAAGGATGTGGACATTATTGATGTTGCTAATGAGTCTTTCTGTAATGGTGTTGAATCATCTTATATGCATGATTCTGAAGCTGTCAAAGATTCGGGGGATATAGATTCCAACGGATCAAAGACATGCTCTTCTTCTTTAGAAGAGATTTCAGTCTGCATGGAAGAGCAAGATGATAGTGATATGGCTAAGTCAAGCCCTTCTTCATGTTTGCCTGATGGCTTTTCTAGTGTTGATAAGGATTCTTCTGTTTCAGTGGATTATCGAAACACAAGGAAAGATTCAGATTCAGACCATAAAGATGTGGTTAAATGCAAGGTAACTTCAAATGGCTTTGCAAATTATAGCAATGGATATGCCAGTGCAAATAAATATGATGATGTCCCAGTGGAAGATGGTGATGGTTGTTTTTCCACTGAAACACCCTCAGCTAAAATGCATCAATTGAAGGAGAGATTGGCTTCTGAAAATGCTGAAGTTGACAAAGGAAATGGAGTTAAGAGAGTAGAAATATCAGGGAATAAGTTAATAATTTAG 2229 0.4213 MLLSGGVSDLKWILQFVFYAFVLAIGLHALLKNTASKYFDLDATFHAHAIPGLLMDHSLCAVCRNPANKKCSRCKSVRYCSQACQQMHWKSEHKVRCKEFQGSSTSVMMNLAQTEVTNRVFKASSAAVNRSTCTSSIALIPECGRGTSRTIKQPKSVLFPYDEFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAFLLEKGHHRECCHNDWCFLCEFETHVEKVRLSSQAFSPMNILSRLPNISGTLGYGRQEDAHEFMRFSIDAMQSVCLDEFGGEKVVPPRNQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGDNMYKCDGCKGYVKAWKRLTVKQAPNILTIALKRFQSGRFGKLNKRVTFPETLDLSPYMSEVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFCGNWYRIDDWKVSSVELEEVLSQGAYMLLYSRVNARPSGLQSIESSETAEVQTIKSEVPPGPTEQAECLSDMKTETYSGGCEAFPFDSSLELKVSCCENVSLTEMNSEVKREQFKDVDIIDVANESFCNGVESSYMHDSEAVKDSGDIDSNGSKTCSSSLEEISVCMEEQDDSDMAKSSPSSCLPDGFSSVDKDSSVSVDYRNTRKDSDSDHKDVVKCKVTSNGFANYSNGYASANKYDDVPVEDGDGCFSTETPSAKMHQLKERLASENAEVDKGNGVKRVEISGNKLII 742
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00541 742 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 178 484 IPR028889 -
Gma04g00541 742 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 690 - -
Gma04g00541 742 Pfam Ubiquitin carboxyl-terminal hydrolase 178 481 IPR001394 GO:0004843|GO:0016579
Gma04g00541 742 MobiDBLite consensus disorder prediction 620 646 - -
Gma04g00541 742 Gene3D - 54 102 - -
Gma04g00541 742 Pfam MYND finger 60 97 IPR002893 -
Gma04g00541 742 SUPERFAMILY HIT/MYND zinc finger-like 55 101 - -
Gma04g00541 742 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 179 194 IPR018200 GO:0004843|GO:0006511
Gma04g00541 742 SUPERFAMILY Cysteine proteinases 174 493 IPR038765 -
Gma04g00541 742 CDD Peptidase_C19E 177 482 - -
Gma04g00541 742 Gene3D Cysteine proteinases 174 492 - -
Gma04g00541 742 ProSiteProfiles Zinc finger MYND-type profile. 60 97 IPR002893 -
Gma04g00541 742 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 19 19 690 - -
Gma04g00541 742 MobiDBLite consensus disorder prediction 627 646 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00541 Gma-Chr4 4852502 4858011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00541 9 489 Miscellaneous Gene Families AT4G31670 64.523 0.0 657
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00541 K11855 - gmx:100810577 1516.52