Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00535 ATGGCTAATAATGAACGTGATCTCTTCTCGGCGGAGATTGTGAATCGTGGAATTGAACCGTCGGGACCCAACGCTGGCTCGTTGACATTCTCTGTGAGGGTGAGGAGGCGCTTACCGGATTTTCTGCAATCGGTGAACCTTAAGTACGTGAAATTGGGTTACCATTATCTCATAAACCATGGCATATACTTGTTCACCATACCCGTTCTTCTCGTGGTGTTTAGTGCTGAGGTTGGGAGCCTCAGCAAAGAGGACCTATGGAAGAAGCTTTGGGAAGACGCGCGTTACGACCTTGCTACGGTTCTTGCTTCCTTTGGGGTCTTCGTTTTCACCTTGTCCGTCTACTTCATGTCGAGGCCACGTCCCATTTACCTCATTGATTTTGCATGTTATAAACCCGATGACGAACTCAAGGTGTCAAGGGAGCAGTTAATGGAGGTGGCAAGGAAATCAGGCAAGTTCGACGAAGCAAGTCTAGAGTTCCAGAAGAGGATGCTAATGTCCTCCGGAATCGGCGATGAAACCTATATACCGAAGGCCGTCATCGCCTCCACCGAGAACACCGCAACGATGAAAGAGGGTCGGGCCGAGGCCTCCATGGTAATGTTCGGAGCCCTCGACGAGCTCTTCGAGAAAACCCGCGTCCGACCAAAGGACGTGGGTGTCCTAGTAGTAAACTGCAGCATCTTCAACCCTACACCATCGCTCTCAGCAATGATCATAAACCACTACAAGATGAGAGGGAACATTCTGAGCTACAACCTCGGAGGAATGGGTTGCAGCGCCGGGATCATTGGTGTGGACCTGGCCAAGGACATTCTTCAGGCGAACCCAAATAACTACGCGGTGGTGGTGAGCACGGAGATGGTGGGGTACAACTGGTACCAGGGGAAGGATAGGTCTATGCTTATCCCGAATAGCTTCTTCCGCATGGGGTGTTCCGCGGTTCTGCTTTCCAACCGTCGAAGGGACTATAGCCGCGCAAAGTACCGCCTTGAACACATTGTTCGCACGCATAAGGGTGCCGATGACCGCAGCTTCAGGTGTGTGTACCAAGAGGAAGATGAGCAAAAACTAAAGGGACTAAAGATCAGCAAAGACTTAATTGAAATTGGTGGTGATGCTCTAAAAACCAACATCACCACACTAGGACCCTTGGTGCTACCCTTTTCTGAGCAGCTTCTCTTCTTTAGCACCCTTGTGTGGAGGCACTTATTTGGCAGCAAAAATGATGGGAATTCACCCTCAATGAAGAAGCCATACATTCCTGACTACAAACTGGCTTTTGAGCACTTTTGTGTTCATGCTGCAAGCAAGACCATTCTTGATGAGCTTCAAAGGAACTTAGAACTGAGTGACAAGAACATCGAAGCATCTAGGATGACACTGCACCGCTTTGGCAACACCTCTAGCAGCAGCATTTGGTATGAGTTGGCTTACATGGAAGCAAAAGAGAGTGTGAGAAGAGGAGACCGCGTTTGGCAACTCGCATTTGGCTCAGGCTTCAAGTGCAACAGCGTGGTTTGGCGCGCCATGCGCCGAGTTACCAAGCCTTCTAGGAACCCTTGGCTTGATTGCATCAACAGATATCCTGCACCTCTCAACAACTGA 1611 0.4978 MANNERDLFSAEIVNRGIEPSGPNAGSLTFSVRVRRRLPDFLQSVNLKYVKLGYHYLINHGIYLFTIPVLLVVFSAEVGSLSKEDLWKKLWEDARYDLATVLASFGVFVFTLSVYFMSRPRPIYLIDFACYKPDDELKVSREQLMEVARKSGKFDEASLEFQKRMLMSSGIGDETYIPKAVIASTENTATMKEGRAEASMVMFGALDELFEKTRVRPKDVGVLVVNCSIFNPTPSLSAMIINHYKMRGNILSYNLGGMGCSAGIIGVDLAKDILQANPNNYAVVVSTEMVGYNWYQGKDRSMLIPNSFFRMGCSAVLLSNRRRDYSRAKYRLEHIVRTHKGADDRSFRCVYQEEDEQKLKGLKISKDLIEIGGDALKTNITTLGPLVLPFSEQLLFFSTLVWRHLFGSKNDGNSPSMKKPYIPDYKLAFEHFCVHAASKTILDELQRNLELSDKNIEASRMTLHRFGNTSSSSIWYELAYMEAKESVRRGDRVWQLAFGSGFKCNSVVWRAMRRVTKPSRNPWLDCINRYPAPLNN 536
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00535 536 PANTHER 3-KETOACYL-COA SYNTHASE 5 532 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gma04g00535 536 Pfam FAE1/Type III polyketide synthase-like protein 115 404 IPR013601 GO:0006633|GO:0016020|GO:0016747
Gma04g00535 536 PIRSF Very_long_ch_3-ktacl-CoA_syn 40 536 IPR012392 GO:0006633|GO:0016020|GO:0016747
Gma04g00535 536 PANTHER 3-KETOACYL-COA SYNTHASE 10 5 532 - -
Gma04g00535 536 SUPERFAMILY Thiolase-like 109 327 IPR016039 GO:0016746
Gma04g00535 536 Coils Coil 442 462 - -
Gma04g00535 536 SUPERFAMILY Thiolase-like 333 511 IPR016039 GO:0016746
Gma04g00535 536 CDD CHS_like 99 509 - -
Gma04g00535 536 Gene3D - 123 511 IPR016039 GO:0016746
Gma04g00535 536 Pfam 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal 430 510 IPR013747 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00535 Gma-Chr4 4806841 4812226 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00535 3 534 Miscellaneous Gene Families AT2G26250 76.770 0.0 887
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00535 K15397 - gmx:100778487 1079.32
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00535 04 4806841 4812226 Gma04g00535 04 4806841 4812226 ECH
Gma04g00535 04 4806841 4812226 Gma06g00528 06 4496445 4501140 GST