Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00507 ATGGCCGCTCAGCCATTCCGGAAAGCCATAGCGAAACCACTTTGTTCTTCATCCACAGCTCCAATCCCAAACCTCTCTCTCGTAACCTGCATCACCACAATCCTTCAAAACATAAATCCCCAAAACCCAGATTACTCACCCCTTAGAGAGTTCTCATCTCACCTCACCCCAAACTTGGTTATCCACGTGATCAAGAACCAAAACAACCCCCAGCACGCCCTTCACTTCTTCAACTGGGCCTCCAACCCCAACCCCAACCCCAACAACTACTCCCACACCCCCCTCTGCTACACCGCCATCACCGACCTCCTTCTCTCCCACTCCCTCTTCTCCACCGCCTTCTCCCTCCTCCGCCACTCCAACAGACTCTCCGACAACCTCGTCTGCAGATTCATCAACGCTCTCGGCCACCGCGGCGACATCAGGGGCGCCATTCACTGGTTCCACCAAGCTAATACCTTTACTAGAGGACGCTGTGTTTTCTCCTGCAACGCCATATTGGGCGTCCTCGTGAGGGCCAACCGTGTCAACATTGCCAAGGCCATCTACGATCAGGTTCTCGCTGAAGCTGTTTTGGAACCGGATGTTTACACCTACACCACCATGATTCGGGGGTTCTGCAAAGTGGGCAAGGTCGAGAGTGCGCGCAAGGTGTTCGATGAAATGCGCTGCGAACCCAATATAGTTACTTACAACACGTTGATCCACGGCTTTTGTAAGAAAGGTGACATGGATGGTGCCAGGAGGGTTTTTGACAGAATGGTGGAGAGTCAGAGTTGCAAGCCGGATGTCGTGAGTTTTACCACTTTGATTGATGGGTATTCGAAGAGGGGTGGATTCCAAGAGGCGCTGGAGTGCTTGAAGGAGATGGTGGAACGAGGGTGTTCCCCGAATGCTGTGACCTACAATGCTTTGGTTGAAGGTCTTTGTTTGAGCGGTGAAGTGGACGAGGCCCGGAAGATGATGAGTAGGATGCGGTTGAATGGTTTGAAAGACGATGTTGCCACAAACACTAGCTTGTTGAAGGGGTTTTGTATTGTGGGAAAGTCTGATGAGGCTGTTAAGCATTTGAGGGAAATGGTTAGTCGCGGGATGAAGCCGGATGTAAAAGCGTATGGGGTTGTTGTCAATGAGTATTGCAAGATTAGAAAACCAAGTGAAGCAGTGTTGCTTCTGAGGGAAATGGTGGTGAGGGGTGTTAAGCCAAATGTGTCAAGCTTCAATGCAGTGTTTAGAGTTCTTGTGGATGAGGGGAAGATTGATGAAGGACTTCATCTTTTGAAGCAGATGCCTAAGATGGGATGCTCGCCCAACTTCTTGTCTTATTGCACAGTGATATGTGGTCTTTGTGAAGTGAAGGGTAGGATGCAACAAGTTGAAGAGCTTGTTTCGAACATGCTTCAGAATGGACATAACCTGGATGCCACTATGTATAATTGCTTACTTCTGGGATATTGTGAAGACAGGGATGAAGAAATGGCACAAAAGACGGTTTATGACATAATGGACAAGAACTTTGTAATCAACCAAGACATTTTCTGCACTTTTGTGAAGCTGTTGTGTGCAAAGGGAAAATTGAAAGAGGCAGAGACAGTATCTGAGGAGATGCGGAGGAGATGCCAGTTGAACGGGAAAGCTGAAACAGAGGAACATTAA 1656 0.4867 MAAQPFRKAIAKPLCSSSTAPIPNLSLVTCITTILQNINPQNPDYSPLREFSSHLTPNLVIHVIKNQNNPQHALHFFNWASNPNPNPNNYSHTPLCYTAITDLLLSHSLFSTAFSLLRHSNRLSDNLVCRFINALGHRGDIRGAIHWFHQANTFTRGRCVFSCNAILGVLVRANRVNIAKAIYDQVLAEAVLEPDVYTYTTMIRGFCKVGKVESARKVFDEMRCEPNIVTYNTLIHGFCKKGDMDGARRVFDRMVESQSCKPDVVSFTTLIDGYSKRGGFQEALECLKEMVERGCSPNAVTYNALVEGLCLSGEVDEARKMMSRMRLNGLKDDVATNTSLLKGFCIVGKSDEAVKHLREMVSRGMKPDVKAYGVVVNEYCKIRKPSEAVLLLREMVVRGVKPNVSSFNAVFRVLVDEGKIDEGLHLLKQMPKMGCSPNFLSYCTVICGLCEVKGRMQQVEELVSNMLQNGHNLDATMYNCLLLGYCEDRDEEMAQKTVYDIMDKNFVINQDIFCTFVKLLCAKGKLKEAETVSEEMRRRCQLNGKAETEEH 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00507 551 Gene3D Tetratricopeptide repeat domain 35 219 IPR011990 GO:0005515
Gma04g00507 551 Gene3D Tetratricopeptide repeat domain 327 398 IPR011990 GO:0005515
Gma04g00507 551 SUPERFAMILY TPR-like 228 400 IPR011990 GO:0005515
Gma04g00507 551 PANTHER REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED 22 543 - -
Gma04g00507 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Gma04g00507 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 227 262 IPR002885 -
Gma04g00507 551 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1, MITOCHONDRIAL 22 543 - -
Gma04g00507 551 Gene3D Tetratricopeptide repeat domain 415 550 IPR011990 GO:0005515
Gma04g00507 551 Gene3D Tetratricopeptide repeat domain 220 326 IPR011990 GO:0005515
Gma04g00507 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 333 367 IPR002885 -
Gma04g00507 551 SUPERFAMILY TPR-like 68 264 IPR011990 GO:0005515
Gma04g00507 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 438 473 IPR002885 -
Gma04g00507 551 TIGRFAM PPR: pentatricopeptide repeat domain 406 438 IPR002885 -
Gma04g00507 551 TIGRFAM PPR: pentatricopeptide repeat domain 197 226 IPR002885 -
Gma04g00507 551 TIGRFAM PPR: pentatricopeptide repeat domain 265 299 IPR002885 -
Gma04g00507 551 TIGRFAM PPR: pentatricopeptide repeat domain 371 404 IPR002885 -
Gma04g00507 551 TIGRFAM PPR: pentatricopeptide repeat domain 338 369 IPR002885 -
Gma04g00507 551 TIGRFAM PPR: pentatricopeptide repeat domain 300 330 IPR002885 -
Gma04g00507 551 TIGRFAM PPR: pentatricopeptide repeat domain 229 264 IPR002885 -
Gma04g00507 551 Pfam PPR repeat 477 505 IPR002885 -
Gma04g00507 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 195 225 IPR002885 -
Gma04g00507 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 403 437 IPR002885 -
Gma04g00507 551 Pfam PPR repeat 293 326 IPR002885 -
Gma04g00507 551 Pfam PPR repeat 192 223 IPR002885 -
Gma04g00507 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 263 297 IPR002885 -
Gma04g00507 551 Pfam PPR repeat family 402 450 IPR002885 -
Gma04g00507 551 Pfam PPR repeat family 333 381 IPR002885 -
Gma04g00507 551 Pfam PPR repeat family 226 276 IPR002885 -
Gma04g00507 551 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 368 402 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00507 Gma-Chr4 4508951 4510606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00507 194 539 Glycosyltransferase AT1G05670 29.799 9.78e-51 184
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00507 - - gmx:100802054 1105.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00507 04 4508951 4510606 Gma04g00507 04 4508951 4510606 ECH