Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00446 atggtggaCCTGTACGTGCTCGGATGGATCATATGCGCCGTGCTCAGCCTCGCTGCGCTTCGTAATTTCGCTTTCACGCGGAAGAATTGTTGCGCTTCGTCGGAGACCGGTGCCACTCGCCGCGCGGTAAATGTTACCACCGCTGCCGGAGAATGCAGATCCTCAAGTCGCGATGGCGCCGTTGACATCATCATTGTCGGAGCCGGTGTTGCCGGCTCTGTTCTCGCTCACACTCTCGGCAAGGATGGGCGTCGGGTACTTGTCATTGAAAGAGATTTGAGTGAACAAGACCGAATTGTTGGAGAGTTGCTACAACCTGAAGGCTATCTCAAATTAATTGAGCTAGGACTTGAAGATTGTGTGGAGAAAATTGATGCTCAGCAAGTGTTTGGTTATGCTCTTTTCAAGGATGGGAAGCACACACGACTCTCTTATCCGTTGGAAAAGTTTCACTCAGATGTTGCTGGCAGAAGCTTTCACAATGGGCGTTTTATTCAGAGGATGAGAGAGAAGGCTGCCTCCCTTCCCAAGTATTGGTTTCTTCCTTCATTTAttacttccctacttgaagagaagggtgttattaaaggtgtgcactacaaaacgaaggatagtcaagaattatcagcttgtgcaccccttaccattgtttgtgatggctgtttctcaaacttgcgccgttctctttgtaatcctaaggtagatgttccctatcatttcgttggcttaatattggagaattgtgaacttccttgtgcaaatcatggccatgtcatattgggagatccttcgccagttctgttctatcggataagtagttcagaaatccgttgtctggttgatgtccctggtcagaaggtcccatctatttccaatggtgaaatgacaaattatttgaagacagtgataatgataagggggaaattcatgcagattcctcccgagcttcatgacgcattcatagccgcagtggacaaaggcaacatcaggacaatgccaaacagaagcatgccagcagctccttatcctactcctggagccctgttgatgggagatgcattcaacatgcgccatcctctaacaggg 1086 0.2514 MVDLYVLGWIICAVLSLAALRNFAFTRKNCCASSETGATRRAVNVTTAAGECRSSSRDGAVDIIIVGAGVAGSVLAHTLGKDGRRVLVIERDLSEQDRIVGELLQPEGYLKLIELGLEDCVEKIDAQQVFGYALFKDGKHTRLSYPLEKFHSDVAGRSFHNGRFIQRMREKAASLPKYWFLPSFITSLLEEKGVIKGVHYKTKDSQELSACAPLTIVCDGCFSNLRRSLCNPKVDVPYHFVGLILENCELPCANHGHVILGDPSPVLFYRISSSEIRCLVDVPGQKVPSISNGEMTNYLKTVIMIRGKFMQIPPELHDAFIAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTG 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00446 362 PANTHER SQUALENE MONOOXYGENASE 1 362 IPR040125 GO:0004506|GO:0016126
Gma04g00446 362 Pfam NAD(P)-binding Rossmann-like domain 65 91 - -
Gma04g00446 362 Gene3D - 55 362 IPR036188 -
Gma04g00446 362 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 211 226 - -
Gma04g00446 362 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 62 84 - -
Gma04g00446 362 PRINTS Aromatic-ring hydroxylase (flavoprotein monooxygenase) signature 344 359 - -
Gma04g00446 362 SUPERFAMILY FAD/NAD(P)-binding domain 61 362 IPR036188 -
Gma04g00446 362 Pfam Squalene epoxidase 212 362 IPR013698 GO:0004506|GO:0016021|GO:0050660
Gma04g00446 362 PANTHER SQUALENE MONOOXYGENASE-RELATED 1 362 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00446 Gma-Chr4 3965273 3968498 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00446 40 362 Miscellaneous Gene Families AT1G58440 72.136 1.69e-169 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00446 K00511 - gmx:100820031 641.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00446 04 3965273 3968498 Gma04g00446 04 3965273 3968498 ECH
Gma04g00446 04 3965273 3968498 Gma06g00443 06 3795062 3799419 GST
Gma17g02227 17 40052299 40056911 Gma04g00446 04 3965273 3968498 PCT
Gma14g00818 14 8666386 8671000 Gma04g00446 04 3965273 3968498 PCT
Gma04g00446 04 3965273 3968498 Gma17g02227 17 40052299 40056911 PCT
Gma04g00446 04 3965273 3968498 Gma14g00818 14 8666386 8671000 PCT