Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00368 ATGAAACCTAATCTGTCTCTCTTTCACTCTCTATTCCATGATGCAAGCTGTGCACTCCTCATCTTTCGACAACTGCTACAGTCTAATGCCAATCCCAACCATCTTACCTTTTCTTTACTCATCAAAGCGTTCCTCTCTTCCTCTTCTTTTTCTCGTGGATCACCAACTACGAGGATACAAGTAAACCAGATTCCAACCCAGTTGTTGAAACGGGGCATTGACCAATTTCTATATGTAAACACCGCTCTCATTGACTTCTACATGAAACTTGGGTTTACCACTCACGCACGCCAACTGTTTGAAGATTTGCCTTCTACAGATGTTGTTTCATGGAACGTTTTGATTTGTGGATATACACAAAATGGGCATCCTCATGATGCCCTTCAACTCTTTGTCCACATGCTAAGAGAGAGTTTCAGACCTAACCAAATAACAATTGCTAGTTTGTTACCATCTTGTGGTCACCGTGAACTTTTCCTTCAAAGTAGATCTGTTCACGCGTTTGGAATCAAAGCTGGCCTTGGTTTGGATCCTCAGTTGAGGTTCACTGATATGGCGAAATTGATTTACGAATATTATCCCACAAAAGACCTGATTTCATTAACTGGGATAATCTCTAGCTATTCTGAAAAAGGCGAGGTAGAATCTGTGGTTCAGGGTTTTATCCAAACTGTGCAGTTAGACATAAAACCAGATGCAGTTGCCTTGATTAGAGTCCTTCATGGAATTAGTGATCCTTCTCATTTTGCTATTGGATGTGCTTTCCATGGTTATGGATTGAAGAGTGGGCTGAATAATGATTGCTTAGTTGCAAATGGGTTAATAAGCACGTATTCAAGATTTGATGAGATACAAGCTGCTTTGTCTTTGTTTTTTGACAGGAGAGAAAAACCATTGATCACTTGGAATTCTGTGATATCTGGCTGTGTTCAGGCTGGAAATTCAAGTGATGCCATGGAGTTGTTCTTCCAAATGAACATGTGTGGACAAAAACCAGATGCAATTACTATCACTAGTCTACTATCGGGGTGTTGCCAGCTTGGGTACTTGCAGATTGGAGAGACACTTCATGGTTATATCCTTAGAAACAATTTGAAAGTGGAAGATTTTACAGTAACTGCTCTAATAGATATGTATACTAAGTGTGGAAGATTAGATTATGCTGAAAAGcgaagagcctctggacaatggggtacgaagttttATAGCATCAATGATCCATGTTTGGCAACATGGAACTCCATCATATTGGGTCACAGTTTATATGGACTTGAACACAAAGCTTTCAGTTGTTTTTCTAAACTACAAGAACAAGGACTAGAACCTGATAAAATCACTTTCTTGGGAGTTTTAGCAGCTTGCACCCATGGAGGACTTGTCTATGCAGGAATGGAATACTTTCGTATCATGAGAGAAGAGTATGGTTTGATGCCAACTTTGCAGCATTATGCTTGCCTAGTTGGCCTCTTGGGTCGGGCAGGGTTGTTCAAGGAAGCAATTGATATTATTAACAACATGGAAATTCGGCCTGATTCTGCTGTCTGGGTAGCATTGCTAAGTGCTTGTTGGATTCAACAGGAAGTAAAGCTTGGCCAAAAATTTGTTTTTATTGAATTACAAAAACGGTGGATTTTATGTATTAATGTCAAATCTTTATGCGATTGTTGGGAGGTGGGATGA 1680 0.3893 MKPNLSLFHSLFHDASCALLIFRQLLQSNANPNHLTFSLLIKAFLSSSSFSRGSPTTRIQVNQIPTQLLKRGIDQFLYVNTALIDFYMKLGFTTHARQLFEDLPSTDVVSWNVLICGYTQNGHPHDALQLFVHMLRESFRPNQITIASLLPSCGHRELFLQSRSVHAFGIKAGLGLDPQLRFTDMAKLIYEYYPTKDLISLTGIISSYSEKGEVESVVQGFIQTVQLDIKPDAVALIRVLHGISDPSHFAIGCAFHGYGLKSGLNNDCLVANGLISTYSRFDEIQAALSLFFDRREKPLITWNSVISGCVQAGNSSDAMELFFQMNMCGQKPDAITITSLLSGCCQLGYLQIGETLHGYILRNNLKVEDFTVTALIDMYTKCGRLDYAEKRRASGQWGTKFYSINDPCLATWNSIILGHSLYGLEHKAFSCFSKLQEQGLEPDKITFLGVLAACTHGGLVYAGMEYFRIMREEYGLMPTLQHYACLVGLLGRAGLFKEAIDIINNMEIRPDSAVWVALLSACWIQQEVKLGQKFVFIELQKRWILCINVKSLCDCWEVG 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00368 559 Gene3D Tetratricopeptide repeat domain 10 169 IPR011990 GO:0005515
Gma04g00368 559 Gene3D Tetratricopeptide repeat domain 405 548 IPR011990 GO:0005515
Gma04g00368 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 298 332 IPR002885 -
Gma04g00368 559 PANTHER OS07G0578800 PROTEIN-RELATED 189 533 IPR045215 GO:0003723|GO:0009451
Gma04g00368 559 PANTHER OS07G0578800 PROTEIN-RELATED 41 181 IPR045215 GO:0003723|GO:0009451
Gma04g00368 559 TIGRFAM PPR: pentatricopeptide repeat domain 300 334 IPR002885 -
Gma04g00368 559 TIGRFAM PPR: pentatricopeptide repeat domain 411 443 IPR002885 -
Gma04g00368 559 TIGRFAM PPR: pentatricopeptide repeat domain 109 142 IPR002885 -
Gma04g00368 559 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 189 533 - -
Gma04g00368 559 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 41 181 - -
Gma04g00368 559 Pfam PPR repeat 370 390 IPR002885 -
Gma04g00368 559 Pfam PPR repeat 411 440 IPR002885 -
Gma04g00368 559 Pfam PPR repeat 483 507 IPR002885 -
Gma04g00368 559 Pfam PPR repeat family 107 153 IPR002885 -
Gma04g00368 559 Pfam PPR repeat family 300 346 IPR002885 -
Gma04g00368 559 Gene3D Tetratricopeptide repeat domain 248 404 IPR011990 GO:0005515
Gma04g00368 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 408 442 IPR002885 -
Gma04g00368 559 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 107 141 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00368 Gma-Chr4 3134409 3136564 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00368 18 532 Glycoside Hydrolase AT3G49170 26.177 1.65e-65 227
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00368 - - gsj:114408704 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00368 04 3134409 3136564 Gma04g00368 04 3134409 3136564 ECH
Gma04g00368 04 3134409 3136564 Gma06g00360 06 3066106 3068250 GST