Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00273 ATGTTGATTCGACGATTGCCTTGGACGGCGATTTGTTTTGCCGCAGCACTTCACTTCCGTTTCGGCGCTACCAATGGACTTCCCATTAGCATTCGCAAGCAACTTCCCTCTTCTCTCTTCTCCTTCTTCTGCTCCAGCTCCCTCTGCTACCTACCTAAAAAGTGGAGACATTATACTTTCTTCGAGGGTCACCAAAAGGATACACCTCACTCGCACTCTCTGAAACCCGGTCTTTACCTCGTTGGAACACCAATCGGAAATCTCGAAGATATCACTCTGAGGGCTATTCGCGTGCTGAACTCGGCTGACGTCATACTCTCAGAGGACACGAGGCACTCGGGGAAGTTGCTTCATCACTATCACATCAAAACACCCCTTATGAGTTATCACAAGTTCAATGAATCGCAAAGGGAACAGGTTGTGCTGAGGAGGTTGAAGCAGGGTGAGATTGTGGCTCTCATAAGTGATGCTGGAATGCCAGGCATCAGTGATCCCGGTATGGAGTTGGCCAAACTGTGTGTGAGTGAGAATATCCTGGTTGTTCCAATCCCTGGTCCCTGTGCTTTGGTATCAGCTCTTTCTGCCTCGGGTTTAACTACTGATGAATTTACATTTGGTAATAAGCTGGCTAAACTGAATTTTGGCATTTATGGCATTTTGGGGTCTAAGATGGCTGTTGTGATGTATGATTTTGTAGTTGGTTTTCTTCCTAAACATTCGGAATTGAGAAGAAAAAGGCTCATGGTTTCAGCTGATCAAACTACAACTCAAATATTTTATGTTGCTCCTCACAAGCTTTCTCAGTTCCTTGATGAGAGTTCTTCAATTTTTGGTGATGCAAGGCAATGTGTTATTGCTCGGGAAATGACTAAGTTACATGAAGAGCGGGATGACACCTTGGAGGAAAATGCTAGTAGAGTAAAAGCCATTAAATGCATTAAGCCTGCTTTTGCAGTACCATTACACGTAGTTAGTCGAATGGATCTTGCCGGTGCTGTCTTTTGGTTAGTATAA 1014 0.4458 MLIRRLPWTAICFAAALHFRFGATNGLPISIRKQLPSSLFSFFCSSSLCYLPKKWRHYTFFEGHQKDTPHSHSLKPGLYLVGTPIGNLEDITLRAIRVLNSADVILSEDTRHSGKLLHHYHIKTPLMSYHKFNESQREQVVLRRLKQGEIVALISDAGMPGISDPGMELAKLCVSENILVVPIPGPCALVSALSASGLTTDEFTFGNKLAKLNFGIYGILGSKMAVVMYDFVVGFLPKHSELRRKRLMVSADQTTTQIFYVAPHKLSQFLDESSSIFGDARQCVIAREMTKLHEERDDTLEENASRVKAIKCIKPAFAVPLHVVSRMDLAGAVFWLV 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00273 337 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 233 300 IPR008189 GO:0008168
Gma04g00273 337 Pfam Tetrapyrrole (Corrin/Porphyrin) Methylases 78 295 IPR000878 GO:0008168
Gma04g00273 337 Gene3D - 62 184 IPR014777 GO:0008168
Gma04g00273 337 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 64 211 IPR008189 GO:0008168
Gma04g00273 337 TIGRFAM TIGR00096: 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 78 206 IPR008189 GO:0008168
Gma04g00273 337 ProSitePatterns RsmI AdoMet-dependent methyltransferase protein family signature. 155 166 IPR018063 GO:0008168
Gma04g00273 337 Gene3D - 225 321 IPR014776 GO:0008168
Gma04g00273 337 SUPERFAMILY Tetrapyrrole methylase 76 296 IPR035996 GO:0008168
Gma04g00273 337 CDD RsmI 79 311 IPR008189 GO:0008168
Gma04g00273 337 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 233 300 - -
Gma04g00273 337 PANTHER RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I 64 211 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00273 Gma-Chr4 2383081 2389080 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00273 K07056 - gmx:100819709 422.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00273 04 2383081 2389080 Gma04g00273 04 2383081 2389080 ECH