Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00272 ATGGCTGTCAACAACAACAAGCTTGTTCTGTTAACATTCGCCATATGCCGTTTAATAGTAACTGTGGGATTAACGGTGGTCCCGGAGCTGCTCGATGTGGGACTCCAGGGTCGTCTCAGCGTGGACACGTTGGAACTGGAGGCGGCTTCGGTGGATTTCGGGAGGCTGAGTCGAGGGGAGCCTTCGGAGGTAGTGCACCCTGCCACGGCGGAGGATGTGGCTAGGGTGGTGAAGGCGGCGTTCGAGTCTCCGTTCGCCGTGTCAGCGAGGGGGCACGGGCATTCGATAAACGGGCAAGCCATGATAAAAGAGAAGAAAGGAGTGGTGATTGAAATGGGAAAAAGTGATAGTGGTGAGGATGGTAGTAGTATTAGAGTGAGTGAGAAAGGAATGTATGTGGACGTGTGGGGTGGGAAGTTGTGGATAGATGTTTTGAGTGCAACATTGGAGTATGGGCTGGCTCCCATGTCTTGGACCGATTACTTGTATTTGTCTGTGGGTGGAACCCTATCCAACGCTGGAATTAGTGGACAAACCTTCAATCACGGTCCTCAGATCACCAATGTTTATGAGCTCGATGTCGTTACAGGAAAGGGTGAGCTGGTGACATGTTCAGAAGATCGTAACTCGGAGTTGTTCCATGCTGTTCTAGGTGGTCTTGGACAATTTGGAATCATCACAAGGGCTAGAATTGCTCTCGAACCAGCTCCTCACAGAGTTCGGTGGATACGAGTACTGTATTCGAATTTTGCAAGGTTTTGTAAGGACCAGGAGTATCTGATATCTCTGCATGGGAAAGCAGCAAGGGAGAGATTCGACTATGTGGAGGGTTTCGTGATAGTTGATGAAGGGCTGATCAATAATTGGAGGTCTTCGTTCTTTTCAGCTAGTAACCCAGTTAAAATCACTTCCCTCAACGCTGACGGAGGTGTTTTGTACTGCTTGGAGATTACCAAAAATTACGACCAAGGAAACGCAGATTCTGTTGATGAGGAAATACAAGCTCTATTGAAAAAGTTAAATTTTATACCAACATCGGTTTTCACAACGGACTTGCCTTACGTGGATTTTCTGGATCGTGTACATAAGGCAGAGCTGAAGCTTAGATCCAAGGGTTTATGGGATGTACCTCATCCGTGGCTCAACCTTTTTGTTCCAAAATCAAGGATAGGGGACTTCGACAAGGGTGTGTTCAAGGGCATTCTTGGAAATAAGACAAGTGGACCTATCCTCATATACCCTATGAACAAAAACAAGCATGCACATATCTCCTCATATATAAACCACATGTCTGCTGCTGATAGCCTCATATCGACTGTCAGTGTTTAG 1329 0.4695 MAVNNNKLVLLTFAICRLIVTVGLTVVPELLDVGLQGRLSVDTLELEAASVDFGRLSRGEPSEVVHPATAEDVARVVKAAFESPFAVSARGHGHSINGQAMIKEKKGVVIEMGKSDSGEDGSSIRVSEKGMYVDVWGGKLWIDVLSATLEYGLAPMSWTDYLYLSVGGTLSNAGISGQTFNHGPQITNVYELDVVTGKGELVTCSEDRNSELFHAVLGGLGQFGIITRARIALEPAPHRVRWIRVLYSNFARFCKDQEYLISLHGKAARERFDYVEGFVIVDEGLINNWRSSFFSASNPVKITSLNADGGVLYCLEITKNYDQGNADSVDEEIQALLKKLNFIPTSVFTTDLPYVDFLDRVHKAELKLRSKGLWDVPHPWLNLFVPKSRIGDFDKGVFKGILGNKTSGPILIYPMNKNKHAHISSYINHMSAADSLISTVSV 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00272 442 ProSitePatterns Oxygen oxidoreductases covalent FAD-binding site. 61 94 IPR006093 GO:0016491
Gma04g00272 442 Pfam Cytokinin dehydrogenase 1, FAD and cytokinin binding 237 426 IPR015345 GO:0009690|GO:0019139|GO:0050660
Gma04g00272 442 Gene3D - 240 425 IPR016170 -
Gma04g00272 442 PANTHER GULONOLACTONE OXIDASE 9 427 - -
Gma04g00272 442 PANTHER CYTOKININ OXIDASE 5-RELATED 9 427 - -
Gma04g00272 442 SUPERFAMILY FAD-binding/transporter-associated domain-like 36 235 IPR036318 GO:0050660
Gma04g00272 442 Gene3D - 49 111 IPR016167 -
Gma04g00272 442 Gene3D - 112 238 IPR016169 -
Gma04g00272 442 SUPERFAMILY FAD-linked oxidases, C-terminal domain 237 422 IPR016164 GO:0003824|GO:0050660
Gma04g00272 442 ProSiteProfiles PCMH-type FAD-binding domain profile. 57 236 IPR016166 GO:0071949
Gma04g00272 442 Pfam FAD binding domain 61 205 IPR006094 GO:0050660
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00272 Gma-Chr4 2377273 2382331 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00272 K00279 - gmx:100790584 842.032
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00272 04 2377273 2382331 Gma04g00272 04 2377273 2382331 ECH
Gma04g00272 04 2377273 2382331 Gma06g00257 06 2294172 2300813 GST