Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00246 ATGTCTGCGTCCGAAGCGGAGAAGAAGGTCGAGGAGGAAGAGAAGAAGGAAGAGGTCAAAGGGGGAGAACTCCTGTTCTGTGGTGCCACTTGTTGGGATATCATTGGTCGTCGTAAAGGCCCCGTCGACGGTAACCTCGTCTCTCCCTCGCGCCTCCGTCCTCTCGTCGGCGTCGATATTCGCTACGTCGCCTCCGGCTGCGTGTCTTGTCATTGCGTGGCGTTGGACGTTGAAGGGCGTTGTTATACATGGGGACGTAATGAGAAAGGGCAACTGGGTCATGGAGATACGATTCAGCGTGATAGGCCAACTGTGGTGTCTGAACTTTCCAAATACAAAATTGTCAAAGCTGGATCAGGGAGGAGCCATACAGTTGTTGTTACGGATGATGGAAATTCCCTAGCATTTGGATGGAACAAACATGGACAACTAGGTTCTGGTTCTGTGAGAAATGAAATTGAGTCATCACCTGTTCGCTGTCTTGTGTCTGAAGTAAAACATACTGCTTGTGGTGGTGACTTCACTGTGTGGTTATCTTCCATTGAAGGAGCTTCTATACTGACTGCTGGGCTTCCACAGTATGGGCAGCTTGGGCATGGAACAGATAATGAGTATAATTCCAAAGACAGCTCTGTGAGGTTGGTTTATGAACCCCAGCCACGTCCTCGAGCAATTGCTGCTCTTGCTGGGGAAGCAATTGTCAAAGTGGCATGTGGAACAAATCATACAGTGGCGGTGGATAAGAATGGCTTCGTCTACACGTGGGGTTTTGGTGGTTATGGAAGGCTAGGACATAGGGAGCAGAAGGATGAGTGGGTCCCACGACGTGTTGAAGTTTTTCAAAATAGAAATGTTTTGCCACCCGATGCAATCATATCAGCAGGTTCTGTGAATTCTTCATGTACTGCAGGTGGAGGGCAGTTGTATATGTGGGGCAAATTAAAGAACACTGGTGATGACTGGATGTATCCAAAGCCTCTAATGGATTTAAGTGGTTGGAATCTACTATGCATGGATTCAGGCAATATGCACCATTTTGTTGGGGCTGATTCCTCTTGCATAAGTTGGGGACATGCTCAGAATGGAGAGCTGGGATATGGACCTACTGGACAGAAGTCTTCAGCTGTACCCAAGAAGGTGGATTTACTTGAGGGTATGCATGTAATAAGTGTTGCTTGTGGTATGGGTCATTCCATGGTTATTGTTGATAGAGCAAATGTTGCTGATCGACTTGACCAGCTTGATATATATGATGGGAAAGCTGTTGGTGAAGGTAATGAGGCCGTAAACACAACTCCAGTGCCTAAGCAGGCTGCTAAAAAGGGTGCAAAAGGAGCTGACAATTCAAAGAAGAGGAAACAATCAAAAGATTCATCTGACTCAGATGAGGATGCTGAAGAAAGTGAGGAGGATAGTGAGGATCAAATTAATGGTGAGGCTGAGGCGAAAAGGCCACGTGGTTCTGGTAAAGGCCGAGGTAAGACACCCAAAAAGTCAGGTGCTAAGGGAAAAGGGTCGGTCTCTGGCCGTGGTCGGGGTGGGACTGCAGCTAATAAAAACAGTTCTAAATCCCCTCAGGTGAAATCTGGTAAGAGAGGAAGACCCCGTAAGTCATAA 1617 0.4737 MSASEAEKKVEEEEKKEEVKGGELLFCGATCWDIIGRRKGPVDGNLVSPSRLRPLVGVDIRYVASGCVSCHCVALDVEGRCYTWGRNEKGQLGHGDTIQRDRPTVVSELSKYKIVKAGSGRSHTVVVTDDGNSLAFGWNKHGQLGSGSVRNEIESSPVRCLVSEVKHTACGGDFTVWLSSIEGASILTAGLPQYGQLGHGTDNEYNSKDSSVRLVYEPQPRPRAIAALAGEAIVKVACGTNHTVAVDKNGFVYTWGFGGYGRLGHREQKDEWVPRRVEVFQNRNVLPPDAIISAGSVNSSCTAGGGQLYMWGKLKNTGDDWMYPKPLMDLSGWNLLCMDSGNMHHFVGADSSCISWGHAQNGELGYGPTGQKSSAVPKKVDLLEGMHVISVACGMGHSMVIVDRANVADRLDQLDIYDGKAVGEGNEAVNTTPVPKQAAKKGAKGADNSKKRKQSKDSSDSDEDAEESEEDSEDQINGEAEAKRPRGSGKGRGKTPKKSGAKGKGSVSGRGRGGTAANKNSSKSPQVKSGKRGRPRKS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00246 538 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 131 181 IPR000408 -
Gma04g00246 538 PRINTS Chromosome condensation regulator RCC1 signature 80 96 IPR000408 -
Gma04g00246 538 PRINTS Chromosome condensation regulator RCC1 signature 114 127 IPR000408 -
Gma04g00246 538 PRINTS Chromosome condensation regulator RCC1 signature 133 149 IPR000408 -
Gma04g00246 538 PRINTS Chromosome condensation regulator RCC1 signature 236 252 IPR000408 -
Gma04g00246 538 PRINTS Chromosome condensation regulator RCC1 signature 252 266 IPR000408 -
Gma04g00246 538 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 79 130 IPR000408 -
Gma04g00246 538 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 250 305 IPR000408 -
Gma04g00246 538 MobiDBLite consensus disorder prediction 424 538 - -
Gma04g00246 538 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 117 127 IPR000408 -
Gma04g00246 538 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 351 404 IPR000408 -
Gma04g00246 538 MobiDBLite consensus disorder prediction 443 460 - -
Gma04g00246 538 SUPERFAMILY RCC1/BLIP-II 21 404 IPR009091 -
Gma04g00246 538 Pfam Regulator of chromosome condensation (RCC1) repeat 249 285 IPR000408 -
Gma04g00246 538 Pfam Regulator of chromosome condensation (RCC1) repeat 187 246 IPR000408 -
Gma04g00246 538 Pfam Regulator of chromosome condensation (RCC1) repeat 355 401 IPR000408 -
Gma04g00246 538 Pfam Regulator of chromosome condensation (RCC1) repeat 130 176 IPR000408 -
Gma04g00246 538 Pfam Regulator of chromosome condensation (RCC1) repeat 78 127 IPR000408 -
Gma04g00246 538 Gene3D - 159 409 IPR009091 -
Gma04g00246 538 Gene3D - 15 158 IPR009091 -
Gma04g00246 538 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 236 246 IPR000408 -
Gma04g00246 538 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 184 249 IPR000408 -
Gma04g00246 538 MobiDBLite consensus disorder prediction 461 476 - -
Gma04g00246 538 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Gma04g00246 538 MobiDBLite consensus disorder prediction 513 528 - -
Gma04g00246 538 PANTHER PROTEIN RCC2 4 523 IPR028641 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00246 Gma-Chr4 2129289 2136826 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00246 - - gmx:100819842 977.237
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00246 04 2129289 2136826 Gma04g00246 04 2129289 2136826 ECH
Gma04g00246 04 2129289 2136826 Gma06g00225 06 2018786 2026693 GST