Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00189 ATGCCTTCACTAGTTGCTGAAGCATTCCAAGCCAATGGCGCAGAACCCTTGAACCTGAAGCCCATTTTCTGTGCCTCAGGCATCAAGGGCAAGCGAGTGACTGCGTTGTCAGCAGAAAAAAATGGCCTCACTGATTTCATTCAAAGAATCATTGCTGACAAACCAGACATCGACACACCATTCAGCGTCCTCGATTTGGGGGTCGTCATGGGCCTGATGGACCAATGGGCCTGCAAGCTCCCCACGGTCCAGCCCTTCTACGCCGTCAAGTGCAACCCAAACCTCTCCCTCATCGGTGCGCTCGCTGCGCTCGGCTCCAGCTTCGACTGCGCCAGCAAAGCCGAGATCGAATCCGTTCTCTCCCTCGGAGTCTCACCCGACAGAATCATCTATGCAAACCCATGCAAATCCGAGTCACACATCAGATACGCCGCCTCCGTAGGCGTCAACGTCACAACCTACGACTCCATAGACGAGGTCGAGAAAATCCGAAAATGCCACCCCACGTGCGAGTTGCTCCTCCGCATTAAACCCCCGCAAGACAGCGGAGCGCGAACCAGCTTGGGCCTCAAATACGGCGCGCTTCCCGAGGAAGTCGATGAGCTTCTCCAAGCTGCTCACGAGGCGGGGCTCAAGGTGACCGGCGTGTCCTTCCACATTGGTAGCGGCGGAGCCGACACGCGAGCCTACCACGGAGCCATATCCGCCGCTAAAAACGTCTTCGAATCGGCTTCTCGGCTCGGCTTGCCCAGAATGGGCGTCCTCGACATCGGCGGCGGCTTCACCTCTGGGCCGTCGTTCGAAGCCGCGGCTTTGAAAATAAACGCCGCGATTGAAGGCAGCTTCGGGAAGGAGGAGGGGCTGGTGGTGATTGGCGAGCCGGGTCGTTATTTCGCGGAAACGGCTTTCACGTTGGCGACGAGAGTTATTGGAAAGCGCGTCAGGGGGGACGTGAGGGAGTATTGGATTGACGATGGGATTTACGGAACTCTTAATAACATCGTGTTTGATTACGCTACCGTCACGTGCATGCCACTCGCGTGCACCTCGAAACCGGAGAATCCTACATGCTGCAGGGATTTGAATTTGAAGACTTACCCTAGCACCGTGTTTGGACCCACATGCGATTCTATTGATACGGTTCTGAGGGATTACCAGCTCCCGGAACTGCAAGTGAACGATTGGCTTGTGTTCCCGAACATGGGTGCCTATACGACGTCGTCCGGGACTAACTTCAATGGGTTTAGCTCCTCAGCCAAGTCCATATTCCTTGCATGTTCGAGCCCGGAACACACCATGTTCTAA 1305 0.5563 MPSLVAEAFQANGAEPLNLKPIFCASGIKGKRVTALSAEKNGLTDFIQRIIADKPDIDTPFSVLDLGVVMGLMDQWACKLPTVQPFYAVKCNPNLSLIGALAALGSSFDCASKAEIESVLSLGVSPDRIIYANPCKSESHIRYAASVGVNVTTYDSIDEVEKIRKCHPTCELLLRIKPPQDSGARTSLGLKYGALPEEVDELLQAAHEAGLKVTGVSFHIGSGGADTRAYHGAISAAKNVFESASRLGLPRMGVLDIGGGFTSGPSFEAAALKINAAIEGSFGKEEGLVVIGEPGRYFAETAFTLATRVIGKRVRGDVREYWIDDGIYGTLNNIVFDYATVTCMPLACTSKPENPTCCRDLNLKTYPSTVFGPTCDSIDTVLRDYQLPELQVNDWLVFPNMGAYTTSSGTNFNGFSSSAKSIFLACSSPEHTMF 434
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00189 434 CDD PLPDE_III_ODC 58 419 - -
Gma04g00189 434 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 300 402 IPR022643 GO:0003824
Gma04g00189 434 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 signature 2. 245 262 IPR022657 -
Gma04g00189 434 SUPERFAMILY PLP-binding barrel 58 302 IPR029066 -
Gma04g00189 434 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 87 105 IPR022653 -
Gma04g00189 434 SUPERFAMILY Alanine racemase C-terminal domain-like 285 417 IPR009006 GO:0003824
Gma04g00189 434 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 72 299 IPR022644 GO:0003824
Gma04g00189 434 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 87 105 IPR000183 GO:0003824
Gma04g00189 434 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 107 119 IPR000183 GO:0003824
Gma04g00189 434 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 210 223 IPR000183 GO:0003824
Gma04g00189 434 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 290 309 IPR000183 GO:0003824
Gma04g00189 434 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 402 415 IPR000183 GO:0003824
Gma04g00189 434 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 57 419 IPR009006 GO:0003824
Gma04g00189 434 PANTHER ARGININE/DIAMINOPIMELATE/ORNITHINE DECARBOXYLASE 30 428 IPR002433 GO:0006596
Gma04g00189 434 Gene3D Alanine racemase 69 298 IPR029066 -
Gma04g00189 434 PANTHER ORNITHINE DECARBOXYLASE-LIKE 30 428 - -
Gma04g00189 434 PRINTS Ornithine decarboxylase signature 59 83 IPR002433 GO:0006596
Gma04g00189 434 PRINTS Ornithine decarboxylase signature 85 112 IPR002433 GO:0006596
Gma04g00189 434 PRINTS Ornithine decarboxylase signature 129 153 IPR002433 GO:0006596
Gma04g00189 434 PRINTS Ornithine decarboxylase signature 159 181 IPR002433 GO:0006596
Gma04g00189 434 PRINTS Ornithine decarboxylase signature 325 338 IPR002433 GO:0006596
Gma04g00189 434 PRINTS Ornithine decarboxylase signature 369 379 IPR002433 GO:0006596
Gma04g00189 434 PRINTS Ornithine decarboxylase signature 389 402 IPR002433 GO:0006596
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00189 Gma-Chr4 1626438 1628746 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00189 K01581 - gmx:548088 862.833
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00189 04 1626438 1628746 Gma04g00189 04 1626438 1628746 ECH