Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00160 ATGGACCTTCGGCTAGGGTTTTTCCGTTCATTATCTTGCTTACAGTTTTTTCTAATTTTATCTTTGGTAGAAGCAAACAATTTCTCAACAAGGCTTCTTTTGACTTCCAATGCCAACACAACGGGGGAAAGGCATTCCGAGGATTATTGTGCAATGTATGACATTTGTGGAACGCGCAGTGATGGTAAAGTAGTGAACTGTCCATATGGTTCCCCGGCTGTGAAGCCAGATGATTTGCTTTCATCAAAGATCCAAAGTTTGTGTCCAACAATTACTGGGAACGTTTGTTGTACAGAAGCTCAGTTTGAAACATTAAGGACGCAAGTCCAACAGGCAATTCCTTTTCTTGTAGGTTGTCCAGCATGCTTAAGAAACTTTTTGAATCTGTTCTGTGAGCTTACATGTTCTCCAAATCAGAGTTTATTTATCAATGTGACTTCAGTTGACAATGTTGGTGGTAATTTGACAGTGGGTGGGATTGATTATTTTGTAACTGATGCTTTTGGTGAAGGGTTATATGAATCCTGCAAGGAGGTAAAGTTTGGCACTATGAATTCTCGAGCTCTACAATTTATTGGTGCCGGTGCTCAAAATTATAAAGACTGGTTTTCTTTTATTGGTAGAAAAGCTGCCCCTCATGGTCTTGGTTCACCTTATGCAATTACATTCTGGCCAAATGCAACCGCATCATCTGACATGAAACCTATGAATGTTTCAACTTATTCATGTGGTGATATTTCTCTTGGCTGTTCTTGTGGTGACTGTCCTTCGTCTTCAGTATGCTCTAATTCAGCTTCAACTACCACCAATAAGAAGGATTCCTGCTCAGTGAAAGTTGGGACTTTAATGGTGAAGTGTGTTGACTTGAGTTTAGCAGTCTTATACATTATATTGATTTGCGTGTTCTTGGGTTGGGGGTTGTATCATCGGATAAGGGAAAGAAAACCGACGTACAGAACAAAATCAGTGTCCAATGTCATTAGTGATGGTGCGCTGTATTCTCATAATAGGGAGAAGGATGAGAACCTCCCAATGCAGATTCATATGATGGAAGATGCTCAACAAAACAGAAATAGAGTTCGGCTCTCGGCTGTACAAGGATATATGACAAATTTTTACAGGTTACTGCCTATGCTATTGACATATATCATCTCATGTAGAATGTCATCTGACCTCATGTTTGCAAATATGATCAGGAAATATGGATCATATGTAGCTAGACATCCAATTATGGTGCTGGCTTCATCCCTGGCTATAGTTCTTCTCCTCTGTCTAGGTCTAATCCGATTCAAGGTTGAGACACGACCTGAGAAGCTCTGGGTAGGACCTGGGAGTAAAGCAGCACAAGAGAAGCAGTTTTTTGACACTCATCTTGCTCCATTTTACAGAATTGAACAGCTCATTCTGGCCACTGTTCCAGATCATGTAAATAGTACATCAACAAGAATTGTGTCAGAGGACAACATTAGGTTTCTGTTTGAAATACAGAAAAAGGTTGATGCAATTCGTGCTAATTATTCTGGCTTGACGGTATCTCTCCAAGACATCTGTATGAAGCCACTAGACAAAGATTGTGCCACTCAAAGTGTCCTTCAGTACTTCAAAATGGATCTAAAAAATTTTGATGATTATGGGGGCATAGAGCATCTCAATTACTGTTTTGAGCATTATTCCTCAGCAGACCATTGTATGAGTGCATTTAAAGCTCCTCTGGATCCAAGCACTGTATTAGGAGGTTTTTCTGGGAATGATTATTCTGAGGCATCTGCGTTCATCGTAACATATCCAATAAATAATGCTATTAATGAAGAAGGTAATGGAACCAGAAAGGCAGTTGCTTGGGAGAAGACCTTTATTCAGTTGGTGAAGGATGAGCTGTTACCGATGGTACAATCAAGAAATTTGACACTGGCTTTTTCATCTGAAAGCTCTGTTGAGGAAGAATTGAAAAGAGAAAGTACTGCAGATGCTATTACGATATTGGTTAGCTATCTTGTGATGTTTGCTTACATATCTCTTACTTTAGGGGATACCCTCCACCCTTCGTCTTTCTATATTTCATCTAAGGTGATGCTTGGTCTTTCAGGAGTAATTCTTGTTATGCTGTCTGTCATTGGATCAGTTGGATTTTTTAGTGTGCTTGGTATAAAATCTACTCTGATCATCATGGAAGTTATCCCATTTCTTGTCCTAGCTGTTGGGGTGGATAATATGTGTATACTAGTTCATGCTGTAAAAAGACAAAAGCTGGAGTTGCCCTTAGAAGGACGAATAAGCAATGCACTTGTTGAAGTTGGACCATCAATAACATTGGCCAGTGTATCAGAGGTTTTAGCATTTGCAGTTGGGAGTTTTATTTCCATGCCTGCAATTCGTGTGTTCTCCATGTTTGCTGCATTGGCTGTTCTTTTGGACTTCCTCCTGCAAGTTACCGCTTTTGTAGCTCTGATAGTTCTTGACTCCTTACGGGCAGAGGATAAGAGAGTTGATTGTTTTCCATGCATAAAAGTACATGCGGACCCTGATATAGGAACTGGACGAAGAAAACCTGGTTTATTGGCTCGATACATGAAGGAGGTTCATGCTCCCATTCTGAGTATTTGGGGAGTAAAAATAGTTGTCATAGCTATTTTTGTGGGATTTGCATTGGCTAGCATTGCATTGAGCACTAGAATTGAACCTGGTTTAGAACAAGAGATTGTTCTTCCTCGAGATTCATATCTTCAGGGTTATTTCAATAATGTTTCAGAATATCTCAGAATTGGACCTCCTGTGTATTTTGTTGTGAAAAACTATAACTACAGCTCAGAATCAACGCATACAAATCAGCTTTGCTCCATTAGCCATTGCAATTCAGACTCTCTTTTAAATGAGATTGCTAGAGCGGCCCTTGTACCAGACACAAGTTATATTGCCAAGCCAGCTGCCTCATGGCTTGATGATTTTCTTGTGTGGGTGTCTCCAGAAGCATTTGGGTGCTGCAGGAAGTTTACAAATGGGAGTTATTGCCCTCCTGATGATCAGCCTCCTTGCTGTGCTCCTGGGGAAAGCTCTTGTGTTTCAGTAGGAACATGTAAAGATTGCACAACGTGTTTCCGTCACTCAGATCTCCATAATGATCGTCCATCTACAACACAATTTAGGGAGAAACTGCCATGGTTTCTTAGTTCTCTGCCATCTGCTGATTGTGCAAAAGGTGGTCATGGAGCTTACACCAGCAGTGTTGAACTGAAAGGCTACGACAATGGCATTATTAAAGCATCGTCATTTCGTACTTATCATACCCCACTCAACAAGCAGATTGACTATGTTAATTCTATGAGGGCTGCTCGAGAGTTCAGTTCAAGAGTTTCTGATTCTTTGAAGATTGAGATCTTTCCATATTCAGTGTTTTATATGTTTTTTGAGCAATACCTTCATATATGGAAGACTGCACTGGTCAACCTTGCTATAGCTATTGGTTATTATTGTTTGATGAATCAATCAAATCTTGGTTTGATCCTCCTTTGCTTTCAACCTTTATGCAGTTTATGGAGCTCATCAATCATTTTGTTGGTATTGGCAATGATTGTGGTTGATCTTATGGGTGTGATGGCCATTCTGAATATCCAATTGAATGCACTCTCGGTGGTCAACCTTGTTATGTCAGTGGGCATTGCTGTTGAGTTTTGTGTGCATATGACTCATTCTTTCACTGTAGCAAGTGGAGACAGAGATCAACGTGCTAAGGAGGCTTTGGGTACAATGGGTGCTTCAGTGTTCAGTGGTATCACACTAACAAAGCTGGTTGGAGTTATTGTTCTTTGCTTCTCAAGAACAGAAGTGTTTGTGATTTATTACTTTCGGATGTACTTGTCATTGGTACTTCTTGGTTTCTTGCATGGACTTGTTTTCTTGCCGGTAGTATTAAGCATCTTTGGTCCACCTTCAAGATGTTCAATCATTGAGCAAGAGGAAGATCGTTCATCAACCTCTTCATAG 3981 0.4022 MDLRLGFFRSLSCLQFFLILSLVEANNFSTRLLLTSNANTTGERHSEDYCAMYDICGTRSDGKVVNCPYGSPAVKPDDLLSSKIQSLCPTITGNVCCTEAQFETLRTQVQQAIPFLVGCPACLRNFLNLFCELTCSPNQSLFINVTSVDNVGGNLTVGGIDYFVTDAFGEGLYESCKEVKFGTMNSRALQFIGAGAQNYKDWFSFIGRKAAPHGLGSPYAITFWPNATASSDMKPMNVSTYSCGDISLGCSCGDCPSSSVCSNSASTTTNKKDSCSVKVGTLMVKCVDLSLAVLYIILICVFLGWGLYHRIRERKPTYRTKSVSNVISDGALYSHNREKDENLPMQIHMMEDAQQNRNRVRLSAVQGYMTNFYRLLPMLLTYIISCRMSSDLMFANMIRKYGSYVARHPIMVLASSLAIVLLLCLGLIRFKVETRPEKLWVGPGSKAAQEKQFFDTHLAPFYRIEQLILATVPDHVNSTSTRIVSEDNIRFLFEIQKKVDAIRANYSGLTVSLQDICMKPLDKDCATQSVLQYFKMDLKNFDDYGGIEHLNYCFEHYSSADHCMSAFKAPLDPSTVLGGFSGNDYSEASAFIVTYPINNAINEEGNGTRKAVAWEKTFIQLVKDELLPMVQSRNLTLAFSSESSVEEELKRESTADAITILVSYLVMFAYISLTLGDTLHPSSFYISSKVMLGLSGVILVMLSVIGSVGFFSVLGIKSTLIIMEVIPFLVLAVGVDNMCILVHAVKRQKLELPLEGRISNALVEVGPSITLASVSEVLAFAVGSFISMPAIRVFSMFAALAVLLDFLLQVTAFVALIVLDSLRAEDKRVDCFPCIKVHADPDIGTGRRKPGLLARYMKEVHAPILSIWGVKIVVIAIFVGFALASIALSTRIEPGLEQEIVLPRDSYLQGYFNNVSEYLRIGPPVYFVVKNYNYSSESTHTNQLCSISHCNSDSLLNEIARAALVPDTSYIAKPAASWLDDFLVWVSPEAFGCCRKFTNGSYCPPDDQPPCCAPGESSCVSVGTCKDCTTCFRHSDLHNDRPSTTQFREKLPWFLSSLPSADCAKGGHGAYTSSVELKGYDNGIIKASSFRTYHTPLNKQIDYVNSMRAAREFSSRVSDSLKIEIFPYSVFYMFFEQYLHIWKTALVNLAIAIGYYCLMNQSNLGLILLCFQPLCSLWSSSIILLVLAMIVVDLMGVMAILNIQLNALSVVNLVMSVGIAVEFCVHMTHSFTVASGDRDQRAKEALGTMGASVFSGITLTKLVGVIVLCFSRTEVFVIYYFRMYLSLVLLGFLHGLVFLPVVLSIFGPPSRCSIIEQEEDRSSTSS 1326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00160 1326 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 6 376 - -
Gma04g00160 1326 PANTHER NPC INTRACELLULAR CHOLESTEROL TRANSPORTER 1 394 1325 - -
Gma04g00160 1326 PANTHER PATCHED FAMILY PROTEIN 6 376 - -
Gma04g00160 1326 PANTHER PATCHED FAMILY PROTEIN 394 1325 - -
Gma04g00160 1326 TIGRFAM 2A060601: Niemann-Pick C type protein family 50 1307 IPR004765 GO:0005319|GO:0016021
Gma04g00160 1326 Gene3D Multidrug efflux transporter AcrB transmembrane domain 608 825 - -
Gma04g00160 1326 Gene3D Multidrug efflux transporter AcrB transmembrane domain 1104 1311 - -
Gma04g00160 1326 Pfam Patched family 475 932 IPR003392 GO:0016021
Gma04g00160 1326 Pfam Patched family 1080 1306 IPR003392 GO:0016021
Gma04g00160 1326 ProSiteProfiles Sterol-sensing domain (SSD) profile. 656 819 IPR000731 -
Gma04g00160 1326 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 633 819 - -
Gma04g00160 1326 SUPERFAMILY Multidrug efflux transporter AcrB transmembrane domain 1108 1307 - -
Gma04g00160 1326 Pfam Niemann-Pick C1 N terminus 48 277 IPR032190 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00160 Gma-Chr4 1355663 1372286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00160 44 1326 Miscellaneous Gene Families AT1G42470 70.529 0.0 1821
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00160 K12385 - gmx:100813262 2492.23
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00160 04 1355663 1372286 Gma04g00160 04 1355663 1372286 ECH