Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00121 ATGGCTCAGCCGCTTGTGAAGAAAGACGATGACCGCGACGACGAAGCTGACTATTCCCCCTTTCTTGGAATTGAAAAGGGGTCTGTTCTTCAGGAGGCCAGGGTTTTTAATGACCCTCAACTAGATGCTAGGAGATGTTCACAGGTTATTACAAAACTCCTATACCTACTGAATCAGGGAGAGACGTTTACAAAGGTTGAAGCCACAGAAGTTTTCTTTGCTGTGACTAAGCTTTTCCAGTCTAAAGATACGGGATTAAGGAGAATGGTCTACCTGATGATAAAGGAGATCTCTCCCTCTGCAGATGAGGTTATCATCGTCACAAGCTCTCTCATGAAGGATATGAACAGCAAGATTGATATGTACCGAGCAAATGCCATTCGAGTGCTGTGTCGTATCACTGACGGAACCCTCCTTTCACAAATTGAGAGGTATTTAAAACAAGCCATTGTAGATAAAAATCCAGTTGTTGCAAGTGCTGCTCTAGTTAGTGGCATTCATCTACTCCAGACAAATCCTGAAATTGTAAAAAGATGGAGCAATGAGGTTCAGGAAGCTGTTCAATCAAGAGCAGCCCTTGTACAATTTCATGCACTGGGTTTGCTGCATCAGATACGACAGAATGACCGGCTAGCAGTTAGCAAGCTGGTTACCAGCTTGACCAGGGGAACTGTTCGCTCACCTTTAGCGCAGTGCCTTTTGATCCGTTACACAAGTCAGGTTATTCATGAATCAGGCCATACACAGTCAGGGGAACGCCCCTTCTATGATTATCTTGAGAGTTGCCTTCGCCACAAGTCCGACATGGTGATTTTTGAAGCTGCCAGGGCAATAACAGAGCTCAATGGTGTAACAAGCCGAGAATTAACTCCAGCGATTACTGTTCTTCAGCTATTCTTAAGTTCGACTAAGCCAGTCTTGAGATTTGCTGCTGTCCGCACCTTGAACAAGGTGGCAATGACGCATCCAATGGCAGTCACCAACTGCAACATTGATATGGAAAGTTTAATCTCTGACCAGAACAGAAGCATTGCTACCCTCGCTATTACTACACTTTTGAAAACAGGAAATGAATCTAGTGTGGATCGTCTTATGAAGCAGATCACAAATTTCATGTCTGATATTGCTGATGAGTTCAAAATTGTTGTTGTTGAAGCAATAAGATCATTGTGCCTGAAGTTTCCTTTAAAATATCGATCTCTGATGAATTTCCTGAGTAATATTCTTAGGGAGGAAGGTGGTTTTGATTACAAGAAGGCAATTGTAGATTCAATTGTGATTCTCATTAGAGATATCCCTAATGCAAAGGAAGCTGGGTTGCTTCATCTTTGTGAGTTCATAGAAGATTGTGAGTTCACTTATTTGTCCACACAGATACTTCACTTCCTGGGAATTGAAGGACCAAAAACATCAGACCCGAGCAAATATATCCGTTACATTTATAATAGAGTACATCTTGAGAATGCAATTGTTAGGGCCAGTGCTGTGAGCACACTGGCAAAATTTGGTGCTGCTGTTGATGCGCTAAAGCCCCGCATATTTGTTCTGCTAAAGCGATGCCTTTTTGACAGTGATGATGAGGTTCGTGATAGGGCAACACTTTACCTGAACACACTTGGAGGTGATGGTTCAGTTGTTGAGACTGATAAAGATGTAAAGGACTTCCTGTTTGGGCCATTTGATGTCCCACTTGTCAATCTGGAGACTAGTTTGAAAAATTATGAGCCTTCAGAAGAAGCTTTTGACATTAACTCTGTGCCTAAGGAGGTCAAGTTCCAGCCTCTTGCAGAAAAGAAAGCCCCTGGTAAAAAGCCAACTGGTTTGGGTGCTCCCCCAAGTGGTCCCCCATCAACTGCAGATGCATATGAGAGGATGCTTTCAACCATTCCAGAGTGTGCAAACTTTGGGAAGCTTTTCAAGTCCTCAGCACCTGTGGAGCTCACTGAAGCTGAGACAGAATATGCAGTTAATGTCATTAAACACATTTTTGATAGGCATGTTGTGTTCCAGTACAACTGCACAAACACGATACCAGAGCAATTGTTGGAAGATGTTATTGTGACTGTGGATGCTTCAGATGCAGATGAATTCTCAGAGGTGTTCTCCAAGCCTCTCAGGTCTCTTCCTTATGATTCACCTGGACAGACTTTTGTGGCATTTGAGAAGCCAGAGGGAGTGCCAACAGTTGGAAAATTTTCTAACGTTCTGAAATTTATTATTAAAGAGGTTGACCCAACCACGGGTGAGGCTGAAGATGACGGTGTTGAAGATGAATACCAGCTGGAGGATCTGGAGATTGTTGCAGCAGATTATGTGTTGAAAGTGGGGGTGTCTAATTTTAGGAATGCATGGGAAAGCTTGGGCCCTGATTTTGAGCGTGTGGATGAGTATGGTCTTGGTCCTAGAGAGAGTTTGGCTGAAGCTGTAAATACTGTTATCAACCTACTTGGCTTGGAGCCTTGTGAGGGCACAGAGGAGGTTCCACCCAATTCAAGATCACACACATGCTTATTGTCGGGTGTATTCACAGGGAATATAAAGGTGCTTGTACGGTTGTCTTTTGGACTTGATGGTCCAAAGGATATTGCAATGAAATTGTCTGTCAGATCTGAGGACGAAACTGTCAGCGATACCATTCATGAGATTGTGGCAAGCGGCTAG 2661 0.4344 MAQPLVKKDDDRDDEADYSPFLGIEKGSVLQEARVFNDPQLDARRCSQVITKLLYLLNQGETFTKVEATEVFFAVTKLFQSKDTGLRRMVYLMIKEISPSADEVIIVTSSLMKDMNSKIDMYRANAIRVLCRITDGTLLSQIERYLKQAIVDKNPVVASAALVSGIHLLQTNPEIVKRWSNEVQEAVQSRAALVQFHALGLLHQIRQNDRLAVSKLVTSLTRGTVRSPLAQCLLIRYTSQVIHESGHTQSGERPFYDYLESCLRHKSDMVIFEAARAITELNGVTSRELTPAITVLQLFLSSTKPVLRFAAVRTLNKVAMTHPMAVTNCNIDMESLISDQNRSIATLAITTLLKTGNESSVDRLMKQITNFMSDIADEFKIVVVEAIRSLCLKFPLKYRSLMNFLSNILREEGGFDYKKAIVDSIVILIRDIPNAKEAGLLHLCEFIEDCEFTYLSTQILHFLGIEGPKTSDPSKYIRYIYNRVHLENAIVRASAVSTLAKFGAAVDALKPRIFVLLKRCLFDSDDEVRDRATLYLNTLGGDGSVVETDKDVKDFLFGPFDVPLVNLETSLKNYEPSEEAFDINSVPKEVKFQPLAEKKAPGKKPTGLGAPPSGPPSTADAYERMLSTIPECANFGKLFKSSAPVELTEAETEYAVNVIKHIFDRHVVFQYNCTNTIPEQLLEDVIVTVDASDADEFSEVFSKPLRSLPYDSPGQTFVAFEKPEGVPTVGKFSNVLKFIIKEVDPTTGEAEDDGVEDEYQLEDLEIVAADYVLKVGVSNFRNAWESLGPDFERVDEYGLGPRESLAEAVNTVINLLGLEPCEGTEEVPPNSRSHTCLLSGVFTGNIKVLVRLSFGLDGPKDIAMKLSVRSEDETVSDTIHEIVASG 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00121 886 SUPERFAMILY Subdomain of clathrin and coatomer appendage domain 771 883 IPR009028 GO:0006886|GO:0016192|GO:0030117
Gma04g00121 886 Gene3D - 768 884 IPR012295 -
Gma04g00121 886 PANTHER COATOMER SUBUNIT GAMMA 1 886 - -
Gma04g00121 886 Gene3D - 23 315 IPR011989 -
Gma04g00121 886 Pfam Adaptin N terminal region 29 539 IPR002553 GO:0006886|GO:0016192|GO:0030117
Gma04g00121 886 PANTHER COATOMER SUBUNIT GAMMA 1 886 IPR017106 -
Gma04g00121 886 PIRSF Gamma-COP 7 884 IPR017106 -
Gma04g00121 886 SUPERFAMILY Clathrin adaptor appendage domain 616 770 IPR013041 -
Gma04g00121 886 Pfam Coatomer gamma subunit appendage platform subdomain 621 766 IPR013040 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Gma04g00121 886 MobiDBLite consensus disorder prediction 594 620 - -
Gma04g00121 886 Pfam Coatomer subunit gamma-1 C-terminal appendage platform 769 883 IPR032154 -
Gma04g00121 886 Gene3D Coatomer, gamma subunit, appendage domain 616 767 IPR037067 GO:0005198|GO:0006886|GO:0016192|GO:0030126
Gma04g00121 886 SUPERFAMILY ARM repeat 31 563 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00121 Gma-Chr4 1024672 1031436 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00121 K17267 - gmx:100814149 1719.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00121 04 1024672 1031436 Gma04g00121 04 1024672 1031436 ECH