Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00079 ATGAGTTCAGACAGCCGCAGCAGGAGCAGAAGCAGGAGCCCAATGGACCGTAAGATCCGCTCTGATCGATTTTCCTATCGTGATGCACCTTACAGGAGAGATTCACGTCGGGGTTTCAGccgtgacaatctgtgcaagaactgcaagagacctggtcattatgcaagagaatgccctaatGTCGCAATTTGCCACAACTGTGGCCTCCCTGGGCATATTGCTTCTGAATGTACGACAAAGTCACTGTGCTGGAACTGTAAAGAACCTGGCCACATGGCCAGCAGTTGTCCAAATGAGGGTATTTGCCACACCTGTGGTAAAGCTGGACACCGTGCTAGGGAATGCTCAGCCCCTCCAATGCCTCCAGGGGACTTAAGGTTGTGCAACAACTGTTATAAGCAGGGGCACATTGCAGCTGAATGTACGAATGAGAAGGCATGCAACAACTGTAGGAAGACAGGCCACTTGGCACGTGATTGTCCTAATGATCCAATTTGTAATTTGTGCAATGTTTCTGGGCATGTGGCTAGACAGTGTCCGAAAGCCAATGTTCTTGGAGATCGCAGCGGTGGTGGCGGTGGTGCTCGTGGTGGTGGCGGTGGTGGCTATAGAGATGTTGTTTGCAGGAACTGCCAGCAATTAGGTCACATGAGTAGGGATTGCATGGGCCCCTTGATGATTtgccacaattgtggaggtcgtggtcacctggcatatgagtgcccttcgggtcggTTTATGGACCGCTACCCCAGGAGGTACTGA 765 0.4366 MSSDSRSRSRSRSPMDRKIRSDRFSYRDAPYRRDSRRGFSRDNLCKNCKRPGHYARECPNVAICHNCGLPGHIASECTTKSLCWNCKEPGHMASSCPNEGICHTCGKAGHRARECSAPPMPPGDLRLCNNCYKQGHIAAECTNEKACNNCRKTGHLARDCPNDPICNLCNVSGHVARQCPKANVLGDRSGGGGGARGGGGGGYRDVVCRNCQQLGHMSRDCMGPLMICHNCGGRGHLAYECPSGRFMDRYPRRY 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00079 254 ProSiteProfiles Zinc finger CCHC-type profile. 208 221 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 ProSiteProfiles Zinc finger CCHC-type profile. 166 181 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 ProSiteProfiles Zinc finger CCHC-type profile. 102 115 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 ProSiteProfiles Zinc finger CCHC-type profile. 64 77 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 Gene3D - 80 99 - -
Gma04g00079 254 SUPERFAMILY Retrovirus zinc finger-like domains 197 245 IPR036875 GO:0003676|GO:0008270
Gma04g00079 254 SUPERFAMILY Retrovirus zinc finger-like domains 81 119 IPR036875 GO:0003676|GO:0008270
Gma04g00079 254 ProSiteProfiles Zinc finger CCHC-type profile. 228 243 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 SUPERFAMILY Retrovirus zinc finger-like domains 36 80 IPR036875 GO:0003676|GO:0008270
Gma04g00079 254 ProSiteProfiles Zinc finger CCHC-type profile. 128 143 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 ProSiteProfiles Zinc finger CCHC-type profile. 45 60 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 ProSiteProfiles Zinc finger CCHC-type profile. 147 162 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 Gene3D - 21 79 - -
Gma04g00079 254 PANTHER OS10G0545300 PROTEIN 3 254 - -
Gma04g00079 254 ProSiteProfiles Zinc finger CCHC-type profile. 83 98 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 SUPERFAMILY Retrovirus zinc finger-like domains 122 163 IPR036875 GO:0003676|GO:0008270
Gma04g00079 254 MobiDBLite consensus disorder prediction 1 27 - -
Gma04g00079 254 Pfam Zinc knuckle 207 221 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 Pfam Zinc knuckle 44 60 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 Pfam Zinc knuckle 146 162 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 Pfam Zinc knuckle 101 116 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 Pfam Zinc knuckle 83 98 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 Pfam Zinc knuckle 64 78 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 Pfam Zinc knuckle 227 243 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 Pfam Zinc knuckle 165 181 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 Gene3D - 145 197 - -
Gma04g00079 254 Gene3D - 100 144 - -
Gma04g00079 254 Gene3D - 202 245 - -
Gma04g00079 254 SMART c2hcfinal6 165 181 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 SMART c2hcfinal6 207 223 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 SMART c2hcfinal6 227 243 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 SMART c2hcfinal6 146 162 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 SMART c2hcfinal6 127 143 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 SMART c2hcfinal6 101 117 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 SMART c2hcfinal6 63 79 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 SMART c2hcfinal6 44 60 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 SMART c2hcfinal6 82 98 IPR001878 GO:0003676|GO:0008270
Gma04g00079 254 PANTHER - 3 254 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00079 Gma-Chr4 685723 690214 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00079 K09250 - gmx:100803820 528.865
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00079 04 685723 690214 Gma04g00079 04 685723 690214 ECH
Gma04g00079 04 685723 690214 Gma06g00074 06 663611 668834 GST