Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00047 ATGCAAGATATCCCCTTCTGTAGCCTTATAGTTTTCTTCTTTCTAATTGGGGCTTCTTTGGTTTCTCCTTTATATGACGGCCCCCTATATGACTCCACTGCTTACGCCGAGTGCAAAGAGAAGCCAGAGGAGCCACTTTATGGAGGAGGACTTTTCAACACTCGTCGTGGTGTTGAAGGCACCATTGATTCATCAATATCAAACGTTGCCAACAACAGCTATGTGCCTTCACTCGTTCTGTATAATCTCACTCAGGGCACCATTTACTCTTTTTCCGCATGGGTGAGAGTAAAAGGTTCAAGTTCAGCTATGGTAAGGACCACCCTGGAAACGGAGAAAGAGACGCATGACTGCATTGGGACAGTTTCGGCCAAGCATGAATGCTGGTCATTCCTGAAGGGTGGATTTGTTCTGAATTGGTCTTCAAATTTATCCATGATCTTCTTCCAGAACGCTGATGGTAAAGATATCAATATAGATGTTGCTAGCCCATCACTCCAGCCATTTACTAAGCAACAATGGAGAATCAATCAACAGTATAAAATCAATACTCAAAGAAAGCGTGCCGTCACTATTCATGTGTCAGATAGTAACGGGAGGAGATTCCAAGGAGCTTCCATCTGTATAGAGCAAATCTCAAAAGACTTCCCTTTTGGATCTGCAATAGCAAAGACCATTCTTGGCAACTTACCCTATCAGAATTGGTTTGTGAAGCGGTTCAATGCGGCAGTGTTTGAAAATGAGCTCAAATGGTACGCCACAGAACCTGATGAAGGCAAGGTCAATTACACCATTTCAGACCAGATGCTGCAATTTGTTAGAACAAACAATATTATAGCAAGAGGGCACAACATATTCTGGGAAAACCCTAAATACACTCCTCCATGGGTTCTTAACCTTACAGGCACCAAGTTACAATCTGCTGTGAATTCTCGAATACACAGTCTCATGAGCCAATACAAAGATGAGTTCATACACTGGGACGTCAGCAATGAAATGCTTCATTTTAATTTCTACGAGGAAAGGCTTGGACCTGATGCCACATTGCATTTCTTTGAGACAGCACATGAATCAGATCCATTGGCAACGCTTTTTATGAATGACTTCAATGTTGTGGAAACATGCAGTGATGTAAAATCCACTGTTGACGCCTATATCTCGCGGGTAAGAGAACTGCAACGAAATGGCATCTTCATGGATGGAATTGGCTTGGAGGGTCACTTCACAATACCCAATCCTCCCCTTATCAGAGCCATCCTTGACAAGTTGGCAACACTTGGCCTTCCCATTTGGCTTACTGAGGTTGATATAAGCAAGACACTTGATAGAGATGCACAGGCAAATTACTTGGAGGAAGTGTTGAGGGAAGGCTTCTCACATCCTTCTGTGAATGGGATAATGCTTTGGACCGCATTTCATCCAAATGGGTGCTACCAAATGTGCCTGACAGACAATAATTTCAAGAACCTCCCAGCAGGTGATGTGGTGGACAAACTTGTTGAAGAGTGGCAAATCAGTCGTGTAGAGGGAGTCACAGATGTGCACGGTTCCTATAGCTTTTATGGGTTCTTAGGAGAATATAGAATTAGTGTCAAGTATGGCAATAAGACTACAAAGTCAACATTCTCCCTCTCTCGAGGTGATGAAACTAGACATTTTACTATTACAATATGA 1674 0.4283 MQDIPFCSLIVFFFLIGASLVSPLYDGPLYDSTAYAECKEKPEEPLYGGGLFNTRRGVEGTIDSSISNVANNSYVPSLVLYNLTQGTIYSFSAWVRVKGSSSAMVRTTLETEKETHDCIGTVSAKHECWSFLKGGFVLNWSSNLSMIFFQNADGKDINIDVASPSLQPFTKQQWRINQQYKINTQRKRAVTIHVSDSNGRRFQGASICIEQISKDFPFGSAIAKTILGNLPYQNWFVKRFNAAVFENELKWYATEPDEGKVNYTISDQMLQFVRTNNIIARGHNIFWENPKYTPPWVLNLTGTKLQSAVNSRIHSLMSQYKDEFIHWDVSNEMLHFNFYEERLGPDATLHFFETAHESDPLATLFMNDFNVVETCSDVKSTVDAYISRVRELQRNGIFMDGIGLEGHFTIPNPPLIRAILDKLATLGLPIWLTEVDISKTLDRDAQANYLEEVLREGFSHPSVNGIMLWTAFHPNGCYQMCLTDNNFKNLPAGDVVDKLVEEWQISRVEGVTDVHGSYSFYGFLGEYRISVKYGNKTTKSTFSLSRGDETRHFTITI 557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00047 557 SUPERFAMILY (Trans)glycosidases 202 506 IPR017853 -
Gma04g00047 557 SUPERFAMILY Galactose-binding domain-like 68 160 IPR008979 -
Gma04g00047 557 Gene3D Glycosidases 207 513 - -
Gma04g00047 557 PRINTS Glycosyl hydrolase family 10 signature 280 292 IPR001000 GO:0004553|GO:0005975
Gma04g00047 557 PRINTS Glycosyl hydrolase family 10 signature 324 335 IPR001000 GO:0004553|GO:0005975
Gma04g00047 557 PRINTS Glycosyl hydrolase family 10 signature 362 373 IPR001000 GO:0004553|GO:0005975
Gma04g00047 557 PRINTS Glycosyl hydrolase family 10 signature 395 407 IPR001000 GO:0004553|GO:0005975
Gma04g00047 557 PANTHER GLYCOSYL HYDROLASE 4 556 IPR044846 GO:0004553|GO:0005975
Gma04g00047 557 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 203 499 IPR001000 GO:0004553|GO:0005975
Gma04g00047 557 Pfam Glycosyl hydrolase family 10 212 470 IPR001000 GO:0004553|GO:0005975
Gma04g00047 557 PANTHER GLYCOSYL HYDROLASE FAMILY 10 PROTEIN 4 556 - -
Gma04g00047 557 SMART glyco_10 249 499 IPR001000 GO:0004553|GO:0005975
Gma04g00047 557 Gene3D - 54 163 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00047 Gma-Chr4 405490 408945 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00047 26 557 Glycoside Hydrolase AT4G38650 64.618 0.0 729
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00047 - - gmx:100793558 1145.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00047 04 405490 408945 Gma04g00047 04 405490 408945 ECH
Gma04g00047 04 405490 408945 Gma06g00043 06 379604 382535 GST