Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma04g00039 ATGGAGGAGCGGACTCGCAGCATTCTGATTTTGATGACCTTGCTTTCCATCTCCATTGCTGGCGGCAATGCAGGTGGCTTGCAGCATCATAAGGGTAGGCATGGTAAGCATGGTCGTCATATGTCTGCTCGTAATGTGACTTACGACGGTAAGTCACTGTTCATTAACGGAAGGCGCGAGATCCTTTTTTCCGGCTCCGTCCATTACACACGAAGCACCCCAGATATGTGGCCTGACATTCTTGACAAAGCAAGGCGCGGAGGCTTGAACGTCATTCAAACTTACGTTTTCTGGAACGCTCACGAGCCAGAGCCCGGCAAGTTCAACTTCCAAGGCAATTATGATCTTGTCAAGTTCATTAGGCTCGTTCAAGCCAAAGGCATGTTTGTCACTCTCAGGGTTGGTCCCTTCATCCAAGCCGAGTGGAACCACGGAGGTCTTCCTTATTGGCTTAGAGAGGTCCCTGGCATCATATTCCGCTCTGACAATGAGCCCTACAAGTTTCACATGAAAGCCTTCGTGTCTAAGATTATACAGATGATGAAGGATGAGAAGCTCTTTGCTCCCCAAGGAGGTCCCATCATCTTGGCTCAAATTGAGAACGAGTACAATCATATCCAACTTGCATACGAAGAGAAGGGAGACAGTTACGTCCAATGGGCTGCCAATATGGCCGTGGCCACCGATATTGGTGTTCCATGGCTCATGTGCAAGCAGAGGGATGCCCCTGATCCCGTCATCAACGCATGCAATGGTAGACACTGTGGTGATACCTTCGCAGGGCCAAACAAACCATACAAACCAGCCATATGGACCGAGAATTGGACTGCTCAGTACAGAGTACATGGAGATCCACCATCCCAGAGATCCGCAGAAGACATCGCATTCTCAGTTGCCCGTTTCTTCTCCAAGAATGGAAATTTGGTCAACTACTATATGTACCATGGTGGAACAAACTTTGGCAGAACAAGCTCTGTGTTTAGCACAACCCGTTATTACGATGAGGCACCTCTTGATGAATACGGTCTGCCCAGAGAACCGAAATGGAGTCACCTGAGGGACGTGCACAAAGCTTTGCTCCTTTGCAGGAGGGCTATCCTTGGTGGCGTTCCCAGTGTCCAAAAGTTGAACCATTTTCACGAGGTTAGAACCTTTGAGAGGGTTGGAACCAACATGTGTGCTGCTTTCATCACTAACAACCACACCATGGAGCCAGCCACCATTAACTTCAGAGGCACAAACTACTTTTTGCCTCCACATTCCATCAGCATCCTCCCCGATTGCAAGACCGTGGTCTTCAACACCCAACAGATTGTTTCACAGCACAATTCAAGGAACTACGAGAGGTCACCCGCAGCCAACAATTTCCACTGGGAGATGTTCAATGAGGCCATTCCAACGGCCAAGAAAATGCCAATCAACCTCCCAGTTCCCGCAGAGCTTTACAGCTTGCTTAAGGACACCACCGACTATGCTTGGTACACCACCAGCTTCGAGTTGAGTCAAGAAGACATGTCAATGAAGCCCGGGGTACTTCCAGTACTTCGTGTTATGAGTCTCGGACATTCAATGGTTGCATTCGTAAACGGAGACATCGTTGGTAAGCACACAAATTTCATCATCATTACTAGAGTGAGAAAGGGGGTACTAATACGAATGTCTTGTTGTGTGTTAGGAACTGCTCATGGTACCCATGAAGAAAAATCTTTTGAGTTCCAGACACCTGTATTGCTCAGGGTTGGAACCAACTATATTTCCTTGTTGTCTAGCACTGTTGGACTACCCGACAGCGGAGCTTACATGGAACATAGGTACGCAGGACCCAAGTCCATAAACATCCTTGGTCTCAACAGGGGGACACTAGATCTTACTCGCAATGGGTGGGGTCATCGGGTTGGTCTGAAAGGTGAGGGCAAGAAAGTTTTCAGCGAGGAAGGATCAACAAGTGTAAAGTGGAAACCACTTGGTGCAGTTCCGAGGGCTCTGAGCTGGTACAGGACAAGATTTGGCACCCCAGAGGGAACAGGCCCTGTTGCCATAAGGATGAGTGGTATGGCGAAGGGAATGGTGTGGGTCAACGGTAACAACATTGGTCGCTACTGGATGAGTTACCTCTCTCCACTTGGAAAGCCTACTCAATCAGAGTACCACATCCCAAGATCTTTCCTGAACCCACAAGACAATTTGCTTGTGATTTTTGAAGAGGAGGCCAGAGTTCCAGCACAGGTTGAGATCCTAAATGTGAACAGAGACACAATCTGCAGCGTAGTTGGAGAGAGGGACCCTGCGAACGTGAATTCATGGGTGTCTAGGAGGGGCAATTTCCATCCTGTAGTGAAATCAGTTGGAGCAGCAGCTTCGATGGCGTGTGCAACTGGGAAAAGGATAGTGGCAGTGGAGTTCGCAAGCTTTGGAAACCCCAGTGGTTATTGCGGAGACTTTGCAATGGGAAGCTGCAATGCTGCTGCCAGCAAGCAAATCGTGGAGCGAGAATGCTTAGGGCAAGAAGCTTGCACGCTTGCATTGGACCGTGCGGTGTTCAACAACAATGGCGTGGATGCTTGCCCAGATTTGGTGAAGCAACTTGCAGTCCAAGTGAGGTGTGCTTAG 2610 0.49 MEERTRSILILMTLLSISIAGGNAGGLQHHKGRHGKHGRHMSARNVTYDGKSLFINGRREILFSGSVHYTRSTPDMWPDILDKARRGGLNVIQTYVFWNAHEPEPGKFNFQGNYDLVKFIRLVQAKGMFVTLRVGPFIQAEWNHGGLPYWLREVPGIIFRSDNEPYKFHMKAFVSKIIQMMKDEKLFAPQGGPIILAQIENEYNHIQLAYEEKGDSYVQWAANMAVATDIGVPWLMCKQRDAPDPVINACNGRHCGDTFAGPNKPYKPAIWTENWTAQYRVHGDPPSQRSAEDIAFSVARFFSKNGNLVNYYMYHGGTNFGRTSSVFSTTRYYDEAPLDEYGLPREPKWSHLRDVHKALLLCRRAILGGVPSVQKLNHFHEVRTFERVGTNMCAAFITNNHTMEPATINFRGTNYFLPPHSISILPDCKTVVFNTQQIVSQHNSRNYERSPAANNFHWEMFNEAIPTAKKMPINLPVPAELYSLLKDTTDYAWYTTSFELSQEDMSMKPGVLPVLRVMSLGHSMVAFVNGDIVGKHTNFIIITRVRKGVLIRMSCCVLGTAHGTHEEKSFEFQTPVLLRVGTNYISLLSSTVGLPDSGAYMEHRYAGPKSINILGLNRGTLDLTRNGWGHRVGLKGEGKKVFSEEGSTSVKWKPLGAVPRALSWYRTRFGTPEGTGPVAIRMSGMAKGMVWVNGNNIGRYWMSYLSPLGKPTQSEYHIPRSFLNPQDNLLVIFEEEARVPAQVEILNVNRDTICSVVGERDPANVNSWVSRRGNFHPVVKSVGAAASMACATGKRIVAVEFASFGNPSGYCGDFAMGSCNAAASKQIVERECLGQEACTLALDRAVFNNNGVDACPDLVKQLAVQVRCA 869
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma04g00039 869 ProSitePatterns Glycosyl hydrolases family 35 putative active site. 191 203 IPR019801 GO:0004553|GO:0005975
Gma04g00039 869 SUPERFAMILY (Trans)glycosidases 45 362 IPR017853 -
Gma04g00039 869 Pfam Beta-sandwich domain in beta galactosidase 368 438 IPR041392 -
Gma04g00039 869 Pfam Beta-galactosidase jelly roll domain 663 732 IPR025300 -
Gma04g00039 869 Gene3D - 639 757 - -
Gma04g00039 869 Gene3D - 777 869 IPR043159 -
Gma04g00039 869 Gene3D Glycosidases 43 361 - -
Gma04g00039 869 Pfam Galactose binding lectin domain 789 868 IPR000922 GO:0030246
Gma04g00039 869 ProSiteProfiles SUEL-type lectin domain profile. 780 869 IPR000922 GO:0030246
Gma04g00039 869 PANTHER BETA-GALACTOSIDASE RELATED 557 865 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 Pfam Glycosyl hydrolases family 35 52 358 IPR031330 -
Gma04g00039 869 SUPERFAMILY Galactose-binding domain-like 422 607 IPR008979 -
Gma04g00039 869 PRINTS Glycosyl hydrolase family 35 signature 56 73 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 PRINTS Glycosyl hydrolase family 35 signature 687 703 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 PRINTS Glycosyl hydrolase family 35 signature 270 285 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 PRINTS Glycosyl hydrolase family 35 signature 307 322 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 PRINTS Glycosyl hydrolase family 35 signature 326 342 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 PRINTS Glycosyl hydrolase family 35 signature 132 151 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 PRINTS Glycosyl hydrolase family 35 signature 77 95 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 PRINTS Glycosyl hydrolase family 35 signature 660 674 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 PRINTS Glycosyl hydrolase family 35 signature 189 204 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 PANTHER BETA-GALACTOSIDASE RELATED 10 536 IPR001944 GO:0004553|GO:0005975
Gma04g00039 869 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 10 536 - -
Gma04g00039 869 SUPERFAMILY Galactose-binding domain-like 625 774 IPR008979 -
Gma04g00039 869 PANTHER GLYCOSIDE HYDROLASE FAMILY 35 PROTEIN 557 865 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma04g00039 Gma-Chr4 330180 333032 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gma04g00039 46 869 Glycoside Hydrolase AT2G16730 56.348 0.0 1017
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma04g00039 - - gmx:100791456 1712.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma04g00039 04 330180 333032 Gma04g00039 04 330180 333032 ECH