Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gma03g02140 ATGTGGAGCTCCAAAACGACATTGATGTTTGGCGTCGCAGCCATTGCTCTGATGATTTTTCTCTCATCTGCTTCAGCGGACGACGTCGTTGCACTCACAGAGGAAACCTTCGAAAACGAGGTTGGCAAGGATCGCGCCGCTCTCGTCGAGTTTTACGCTCCCTGGTGTGGACACTGTAAAAGGCTTGCACCGGAGTACGAACAGCTCGGAACGACTTTTAAGAAAACGAAGTCCGTTTTGATTGCCAAGGTGGATTGTGATGAACAGAAAAGTGTTTGTAGTAAATATGGGGTATCTGGTTACCCTACCATTCAATGGTTTCCTAAGGGATCTCTAGAGCCTAAAAAGTATGAAGGTGCACGTACTGCAGAAGCCCTTGCGGCGTTTGTGAACATTGAAGCAGGTACAAATGTGAAGATAGCTTCTGTTCCATCCAGTGTGGTAGTTCTCTCTCCAGATAACTTTGATGAGGTTGTCTTGGATGAAACAAAAGATGTTCTGGTGGAATTCTATGCACCATGGTGCGGTCATTGCAAGGCCCTTGCCCCTATTTATGAGAAGGTTGCTGCAGCATTTAACCTGGATAAAGATGTAGTTATGGCCAATGTTGATGCTGACAAGTATAAAGATTTGGCTGAGAAATATGGTGTTAGTGGCTATCCTACACTGAAGTTTTTCCCAAAGAGCAACAAAGCTGGTGAAGATTATAATGGTGGCCGTGATTTGGATGATTTTGTAGCATTCATCAATGAGAAATGTGGCACCTACCGTGATGGGAAGGGACAGCTTACTTCTAAGGCTGGTATAATAGCATCTCTGGATGACTTGGTGAAGGAGTTTGTGAGTGCTGACAGTAATGAGAAGAAGGCAGTATATTCCCGGCTTGAGGAGGAAGTTAAGAAGCTTAAAGGTTCTTCTGCCAGACATGGCGACCTCTACTTAAAACTTGCTAAGAAGGGTATAGAAAAAGGTGCAGACTATGCAAAGAATGAAATTCAACGTCTTGAGCGCATGCTTGAGAAGTCAATCAGCCCAGCAAAAGCAGATGAATTCACTCTCAAGAAGAACATCTTATCTACCTTTGCTTGA 1089 0.4426 MWSSKTTLMFGVAAIALMIFLSSASADDVVALTEETFENEVGKDRAALVEFYAPWCGHCKRLAPEYEQLGTTFKKTKSVLIAKVDCDEQKSVCSKYGVSGYPTIQWFPKGSLEPKKYEGARTAEALAAFVNIEAGTNVKIASVPSSVVVLSPDNFDEVVLDETKDVLVEFYAPWCGHCKALAPIYEKVAAAFNLDKDVVMANVDADKYKDLAEKYGVSGYPTLKFFPKSNKAGEDYNGGRDLDDFVAFINEKCGTYRDGKGQLTSKAGIIASLDDLVKEFVSADSNEKKAVYSRLEEEVKKLKGSSARHGDLYLKLAKKGIEKGADYAKNEIQRLERMLEKSISPAKADEFTLKKNILSTFA 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gma03g02140 362 CDD PDI_a_ERp38 28 130 - -
Gma03g02140 362 CDD ERp29c 270 361 IPR011679 GO:0005783
Gma03g02140 362 PANTHER PROTEIN DISULFIDE ISOMERASE-LIKE 2-1 15 361 - -
Gma03g02140 362 ProSitePatterns Thioredoxin family active site. 167 185 IPR017937 -
Gma03g02140 362 PRINTS Thioredoxin family signature 166 174 - -
Gma03g02140 362 PRINTS Thioredoxin family signature 174 183 - -
Gma03g02140 362 PRINTS Thioredoxin family signature 216 227 - -
Gma03g02140 362 Pfam Endoplasmic reticulum protein ERp29, C-terminal domain 268 361 IPR011679 GO:0005783
Gma03g02140 362 SUPERFAMILY Thioredoxin-like 27 131 IPR036249 -
Gma03g02140 362 Gene3D - 267 362 IPR036356 -
Gma03g02140 362 SUPERFAMILY Thioredoxin-like 144 256 IPR036249 -
Gma03g02140 362 ProSiteProfiles Thioredoxin domain profile. 137 254 IPR013766 -
Gma03g02140 362 CDD PDI_a_ERp38 153 249 - -
Gma03g02140 362 PANTHER PROTEIN DISULFIDE-ISOMERASE C17H9.14C-RELATED 15 361 - -
Gma03g02140 362 Pfam Thioredoxin 29 131 IPR013766 -
Gma03g02140 362 Pfam Thioredoxin 147 250 IPR013766 -
Gma03g02140 362 SUPERFAMILY ERP29 C domain-like 267 361 IPR036356 -
Gma03g02140 362 Coils Coil 285 305 - -
Gma03g02140 362 Gene3D Glutaredoxin 22 138 - -
Gma03g02140 362 TIGRFAM pdi_dom: protein disulfide-isomerase domain 151 252 IPR005788 GO:0003756
Gma03g02140 362 TIGRFAM pdi_dom: protein disulfide-isomerase domain 32 131 IPR005788 GO:0003756
Gma03g02140 362 Gene3D Glutaredoxin 139 252 - -
Gma03g02140 362 ProSiteProfiles Thioredoxin domain profile. 8 135 IPR013766 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gma03g02140 Gma-Chr3 46880032 46883202 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gma03g02140 K09584 - gmx:100796355 714.146
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Gma03g02140 03 46880032 46883202 Gma03g02140 03 46880032 46883202 ECH
Gma19g02173 19 50575501 50579410 Gma03g02140 03 46880032 46883202 GST